Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1421
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287... 35 0.057
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.2
06_01_0655 + 4742267-4742531,4743313-4744136 30 2.1
07_03_0846 - 21983581-21986055 29 2.8
07_03_0414 + 17892133-17893590 29 3.7
03_05_0183 - 21681673-21682524 29 3.7
09_04_0235 + 15904891-15905218,15906732-15907594 28 6.5
07_03_1528 + 27474973-27475289,27476890-27477073,27477081-274772... 28 6.5
01_05_0561 - 23296977-23297174,23297304-23297431,23297990-232983... 28 8.6
>09_04_0593 -
18825741-18826702,18826994-18827875,18828687-18828775,
18828942-18829080,18829405-18829531,18829629-18829838
Length = 802
Score = 35.1 bits (77), Expect = 0.057
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = -1
Query: 306 VREEPQFRTF-GSCTRPSAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 130
+++EP+FR F GS R +K +AG+ N + A +++++S K + E SG
Sbjct: 691 IKDEPEFRAFTGSGNRLDGKASKPLAAGISSNPAAASSAISDSNK-KVNQETAASG---- 745
Query: 129 CDFTSRVSHSKRETRRRSPFGSRRS 55
VS+S R+ + + FGS +S
Sbjct: 746 ------VSNSTRQKKGKLVFGSNKS 764
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -1
Query: 198 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 64
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>06_01_0655 + 4742267-4742531,4743313-4744136
Length = 362
Score = 29.9 bits (64), Expect = 2.1
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Frame = +2
Query: 56 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 232
++RDP G+R + F +++ E RG ++ PD A +AS R +
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVASQ----RSHAE 184
Query: 233 DGSFAPPALGRVHEPNVRNCGSS---RTEQYYY 322
S PA +P V + G+ T Y Y
Sbjct: 185 PSSMNMPAFSIEEKPAVMSAGNKTMYNTNAYAY 217
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 56 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 205
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>07_03_0414 + 17892133-17893590
Length = 485
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +3
Query: 276 QMSETAVPLVLSSITIATTSHQ*GKTNLSHDGLIPAHVPF*WVNNPTL-GEFCFAMIGRA 452
Q + V + L S+T+ + T H GL+ A PF WV P + G A + A
Sbjct: 279 QADGSVVYVSLGSLTVISLEQF---TEFLH-GLVAAGYPFLWVLRPDMVGASQSAALREA 334
Query: 453 DIEGSKSNVAMNAWLPQASI 512
KS + W PQ +
Sbjct: 335 VAAAGKSKARVVEWAPQRGV 354
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 496 SQAFIATLLFDPSMSALPIIAKQNSPS 416
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>09_04_0235 + 15904891-15905218,15906732-15907594
Length = 396
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 56 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 232
++RDP+ G+R + + +++ E RG ++ PD +A L ++
Sbjct: 150 EIRDPSKGVRVWLGTYNTAEEAARAYDAEARKIRGKKAKVNFPDEPAVAQKLSLKQNAAK 209
Query: 233 DGSFAPP 253
APP
Sbjct: 210 QEKLAPP 216
>07_03_1528 +
27474973-27475289,27476890-27477073,27477081-27477261,
27477270-27478206,27478384-27479035,27479352-27479798
Length = 905
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 344 LLMACRCDSNTAQYERNRSF-GHLVHALGRAPVVRSY 237
LL+ R DS Q E +R+ GH V +L AP ++SY
Sbjct: 164 LLILLRLDSFYEQLEGHRAVTGHAVRSLNGAPFLQSY 200
>01_05_0561 -
23296977-23297174,23297304-23297431,23297990-23298362,
23298629-23299069
Length = 379
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 267 TRPSAGGAKLPSAGLCLNASKAEASLAESGKDML 166
TR S AKLP A CLN ++ E A +D+L
Sbjct: 272 TRFSLTSAKLPDAMFCLNVNRLEQEDAILPQDLL 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,793,793
Number of Sequences: 37544
Number of extensions: 454623
Number of successful extensions: 1254
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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