Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1419
         (707 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4XLD1 Cluster: Putative uncharacterized protein; n=1; ...    35   1.7  
UniRef50_O00206 Cluster: Toll-like receptor 4 precursor; n=93; M...    33   9.1  

>UniRef50_Q4XLD1 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 144

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 215 RYKLIQHYYTILIFLNLQITAYKLIAI-----VKIQF*CHLTLPANFLPHCVFSNHQLP* 51
           R++LI  Y+ +L FL  +IT Y    I       I    HL+LP   LP+   SN  L  
Sbjct: 62  RFRLIWKYFNLLFFLKKKITIYNYFVIPQICHTSILSLLHLSLPNLTLPNLTLSNLTLSN 121

Query: 50  YVII*AF 30
           +V+   F
Sbjct: 122 FVLFARF 128


>UniRef50_O00206 Cluster: Toll-like receptor 4 precursor; n=93;
           Mammalia|Rep: Toll-like receptor 4 precursor - Homo
           sapiens (Human)
          Length = 839

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 22/79 (27%), Positives = 38/79 (48%)
 Frame = -1

Query: 401 THYDYSQHNL*KLQKIGQLNIPQIKSSFKRTKYFSSMNLVTFICFTISAVYDYLTNNLIT 222
           T  D SQ  L +L      ++  ++        F S++   + C     V DY  N+++T
Sbjct: 499 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 558

Query: 221 TCRYKLIQHYYTILIFLNL 165
           + + +L QH+ + L FLNL
Sbjct: 559 SKKQEL-QHFPSSLAFLNL 576


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,714,237
Number of Sequences: 1657284
Number of extensions: 10476811
Number of successful extensions: 20567
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20559
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)