Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1419
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749...    31   1.2  
05_05_0317 + 24039343-24042717                                         30   2.1  
06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178     29   3.6  
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873...    29   3.6  
01_07_0068 - 40861266-40861381,40861469-40861718,40861813-408619...    29   4.8  

>01_06_0129 -
           26770543-26770720,26774592-26774719,26774829-26774933,
           26775661-26775788,26777332-26777433,26778760-26778861,
           26779777-26779852,26779971-26780059,26780177-26780230,
           26780482-26780614,26780671-26780797,26781590-26781648
          Length = 426

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 365 LQKIGQLNIPQIKSSFKRTKYFSSMNLVTFICFTISAVYDYLTNNLI 225
           +Q++G   +P     F    YF+ +++  F CF + A YD   +NL+
Sbjct: 1   MQRLGDFRLPPF---FNYPPYFTFVSVEPFSCFHLLAFYDIHNHNLL 44


>05_05_0317 + 24039343-24042717
          Length = 1124

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 176 KSKWCSNVESAYTCMWLLNCWLNN 247
           +S+  S V S++ C+WL NC+ N+
Sbjct: 99  RSRHLSKVRSSFCCLWLNNCFSNH 122


>06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178
          Length = 518

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 347 LNIPQIKSSFKRTKYFSSMNLVTFICFTISAVYDYLTNNLITTC 216
           L++ QI  S  R K     N ++ ICF   ++  Y+  N+IT C
Sbjct: 185 LSLRQIVVSKMRFKPQQRFNELSEICFHFVSIESYMLRNVITRC 228


>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
            19387454-19388884,19388953-19389118,19392035-19392114,
            19392393-19392462,19392550-19392761,19392837-19392890,
            19393471-19393623,19393715-19393930,19394029-19394248,
            19394332-19394399,19394510-19394643,19394755-19394854,
            19394943-19395421,19395506-19395699,19396270-19396355,
            19396364-19396444,19396842-19397023,19397305-19397346,
            19398247-19398558,19399374-19399434,19399435-19399617,
            19399744-19399863,19400380-19401051,19402597-19402668,
            19402742-19402865,19403563-19403651,19405023-19405097
          Length = 2170

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -1

Query: 572  HEETLLHFVITKILLLITKMYIINE 498
            HE+TL+  +I  ++LLI  ++I+NE
Sbjct: 979  HEQTLVDLMIPSLVLLINLLHILNE 1003


>01_07_0068 -
           40861266-40861381,40861469-40861718,40861813-40861914,
           40862687-40862759,40863590-40863754,40866380-40866459,
           40867565-40867630,40867764-40868123,40868388-40868648
          Length = 490

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 300 FQHEFGNIHMLYNFSRV 250
           F HE GNI++LY FS +
Sbjct: 382 FDHEMGNINVLYRFSNI 398


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,275,527
Number of Sequences: 37544
Number of extensions: 236011
Number of successful extensions: 427
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)