Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1419
(707 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U93091-1|AAC80227.1| 839|Homo sapiens Toll protein homolog prot... 33 1.3
U88880-1|AAC34135.1| 799|Homo sapiens Toll-like receptor 4 prot... 33 1.3
BC117422-1|AAI17423.1| 839|Homo sapiens toll-like receptor 4 pr... 33 1.3
AL160272-2|CAH72619.1| 799|Homo sapiens toll-like receptor 4 pr... 33 1.3
AL160272-1|CAH72618.1| 839|Homo sapiens toll-like receptor 4 pr... 33 1.3
AF177766-1|AAF07823.1| 752|Homo sapiens human toll-like recepto... 33 1.3
AF177765-1|AAF05316.1| 839|Homo sapiens toll-like receptor 4 pr... 33 1.3
AF172171-1|AAF89753.1| 839|Homo sapiens toll-like receptor 4 pr... 33 1.3
>U93091-1|AAC80227.1| 839|Homo sapiens Toll protein homolog
protein.
Length = 839
Score = 32.7 bits (71), Expect = 1.3
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = -1
Query: 401 THYDYSQHNL*KLQKIGQLNIPQIKSSFKRTKYFSSMNLVTFICFTISAVYDYLTNNLIT 222
T D SQ L +L ++ ++ F S++ + C V DY N+++T
Sbjct: 499 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 558
Query: 221 TCRYKLIQHYYTILIFLNL 165
+ + +L QH+ + L FLNL
Sbjct: 559 SKKQEL-QHFPSSLAFLNL 576
>U88880-1|AAC34135.1| 799|Homo sapiens Toll-like receptor 4
protein.
Length = 799
Score = 32.7 bits (71), Expect = 1.3
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = -1
Query: 401 THYDYSQHNL*KLQKIGQLNIPQIKSSFKRTKYFSSMNLVTFICFTISAVYDYLTNNLIT 222
T D SQ L +L ++ ++ F S++ + C V DY N+++T
Sbjct: 459 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 518
Query: 221 TCRYKLIQHYYTILIFLNL 165
+ + +L QH+ + L FLNL
Sbjct: 519 SKKQEL-QHFPSSLAFLNL 536
>BC117422-1|AAI17423.1| 839|Homo sapiens toll-like receptor 4
protein.
Length = 839
Score = 32.7 bits (71), Expect = 1.3
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = -1
Query: 401 THYDYSQHNL*KLQKIGQLNIPQIKSSFKRTKYFSSMNLVTFICFTISAVYDYLTNNLIT 222
T D SQ L +L ++ ++ F S++ + C V DY N+++T
Sbjct: 499 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 558
Query: 221 TCRYKLIQHYYTILIFLNL 165
+ + +L QH+ + L FLNL
Sbjct: 559 SKKQEL-QHFPSSLAFLNL 576
>AL160272-2|CAH72619.1| 799|Homo sapiens toll-like receptor 4
protein.
Length = 799
Score = 32.7 bits (71), Expect = 1.3
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = -1
Query: 401 THYDYSQHNL*KLQKIGQLNIPQIKSSFKRTKYFSSMNLVTFICFTISAVYDYLTNNLIT 222
T D SQ L +L ++ ++ F S++ + C V DY N+++T
Sbjct: 459 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 518
Query: 221 TCRYKLIQHYYTILIFLNL 165
+ + +L QH+ + L FLNL
Sbjct: 519 SKKQEL-QHFPSSLAFLNL 536
>AL160272-1|CAH72618.1| 839|Homo sapiens toll-like receptor 4
protein.
Length = 839
Score = 32.7 bits (71), Expect = 1.3
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = -1
Query: 401 THYDYSQHNL*KLQKIGQLNIPQIKSSFKRTKYFSSMNLVTFICFTISAVYDYLTNNLIT 222
T D SQ L +L ++ ++ F S++ + C V DY N+++T
Sbjct: 499 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 558
Query: 221 TCRYKLIQHYYTILIFLNL 165
+ + +L QH+ + L FLNL
Sbjct: 559 SKKQEL-QHFPSSLAFLNL 576
>AF177766-1|AAF07823.1| 752|Homo sapiens human toll-like receptor 4
protein.
Length = 752
Score = 32.7 bits (71), Expect = 1.3
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = -1
Query: 401 THYDYSQHNL*KLQKIGQLNIPQIKSSFKRTKYFSSMNLVTFICFTISAVYDYLTNNLIT 222
T D SQ L +L ++ ++ F S++ + C V DY N+++T
Sbjct: 412 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 471
Query: 221 TCRYKLIQHYYTILIFLNL 165
+ + +L QH+ + L FLNL
Sbjct: 472 SKKQEL-QHFPSSLAFLNL 489
>AF177765-1|AAF05316.1| 839|Homo sapiens toll-like receptor 4
protein.
Length = 839
Score = 32.7 bits (71), Expect = 1.3
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = -1
Query: 401 THYDYSQHNL*KLQKIGQLNIPQIKSSFKRTKYFSSMNLVTFICFTISAVYDYLTNNLIT 222
T D SQ L +L ++ ++ F S++ + C V DY N+++T
Sbjct: 499 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 558
Query: 221 TCRYKLIQHYYTILIFLNL 165
+ + +L QH+ + L FLNL
Sbjct: 559 SKKQEL-QHFPSSLAFLNL 576
>AF172171-1|AAF89753.1| 839|Homo sapiens toll-like receptor 4
protein.
Length = 839
Score = 32.7 bits (71), Expect = 1.3
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = -1
Query: 401 THYDYSQHNL*KLQKIGQLNIPQIKSSFKRTKYFSSMNLVTFICFTISAVYDYLTNNLIT 222
T D SQ L +L ++ ++ F S++ + C V DY N+++T
Sbjct: 499 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 558
Query: 221 TCRYKLIQHYYTILIFLNL 165
+ + +L QH+ + L FLNL
Sbjct: 559 SKKQEL-QHFPSSLAFLNL 576
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,318,057
Number of Sequences: 237096
Number of extensions: 1417510
Number of successful extensions: 2111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2111
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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