Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1419
         (707 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089668-1|AAL90406.1|  428|Drosophila melanogaster RH40246p pro...    30   3.5  
AE014297-4147|AAF56724.2|  428|Drosophila melanogaster CG5612-PA...    30   3.5  
AE013599-2047|AAM68536.1|  744|Drosophila melanogaster CG16801-P...    29   8.2  

>AY089668-1|AAL90406.1|  428|Drosophila melanogaster RH40246p
           protein.
          Length = 428

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 260 SAVYDYLTNNLITTCRYKLIQHY 192
           S V+ Y+ NNLIT  R+ ++ HY
Sbjct: 244 SVVFYYIDNNLITYVRFAILDHY 266


>AE014297-4147|AAF56724.2|  428|Drosophila melanogaster CG5612-PA
           protein.
          Length = 428

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 260 SAVYDYLTNNLITTCRYKLIQHY 192
           S V+ Y+ NNLIT  R+ ++ HY
Sbjct: 244 SVVFYYIDNNLITYVRFAILDHY 266


>AE013599-2047|AAM68536.1|  744|Drosophila melanogaster CG16801-PB,
           isoform B protein.
          Length = 744

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 591 LYDGFDLTNY*KTPNSVARGASLFSFPVCFNEN-YTLQTE 707
           L+D  D+TN  + P++V+R  S F  P   + N YT Q E
Sbjct: 510 LHDSIDVTNDNEEPHAVSRSDSSFIMPQFMSPNLYTHQHE 549


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,999,795
Number of Sequences: 53049
Number of extensions: 471009
Number of successful extensions: 683
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3128965752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)