Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1419
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    29   3.3  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      29   3.3  
AF025452-8|AAB70940.1|  324|Caenorhabditis elegans Serpentine re...    29   4.3  
AL023847-4|CAA19550.1|  349|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 418  LIY*DKRIMTIHNIIYKNYKKLGSSTYHKSSQVLK 314
            L Y  +  + +HNI+ K    + S  YH+SS V K
Sbjct: 2688 LYYQHQAFLRLHNIVKKRSHIITSDDYHRSSDVCK 2722


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 418  LIY*DKRIMTIHNIIYKNYKKLGSSTYHKSSQVLK 314
            L Y  +  + +HNI+ K    + S  YH+SS V K
Sbjct: 2688 LYYQHQAFLRLHNIVKKRSHIITSDDYHRSSDVCK 2722


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 418  LIY*DKRIMTIHNIIYKNYKKLGSSTYHKSSQVLK 314
            L Y  +  + +HNI+ K    + S  YH+SS V K
Sbjct: 2688 LYYQHQAFLRLHNIVKKRSHIITSDDYHRSSDVCK 2722


>AF025452-8|AAB70940.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein31 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
 Frame = -1

Query: 350 QLNIPQIKSSFKRTKYFS--SMNLVTFICFTISAVYDYLTNNLITTCRYKLIQHYYTILI 177
           QLN P +   F+R + FS   M         ++AV  + T  +I+     L+   Y +L 
Sbjct: 166 QLNYPSMVPQFQRLREFSIVRMTYELITLLVLNAVGTFKTTLVISV----LVFRMYNVLF 221

Query: 176 FLNLQITAYKLIAIVKIQF*C----HLTLPANFLP 84
            +  Q++   L A  KI   C     +T P +FLP
Sbjct: 222 LMQSQLSRTTL-AKHKIALKCLVLQFMTTPISFLP 255


>AL023847-4|CAA19550.1|  349|Caenorhabditis elegans Hypothetical
           protein Y57A10C.8 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -1

Query: 287 LVTFICFTISAVYDYLTNNLITTC--RYKL-IQHYYTILIFLNLQITAYKLIAIVKIQF 120
           LVT +C  ++AV  +  N  I TC  R K+       + ++L +   AY L A++ + +
Sbjct: 34  LVTDVCCLVAAVLSFCINFFIITCFLRKKIPCAENLRLALYLAIGDFAYALAALIHVGY 92


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -1

Query: 290 NLVTFICFTISAVYDYLTNNLITTCRYKLIQHYYTILIFLNLQITAYKLIAIVKIQF*CH 111
           NL+  IC   S V+    N    + + +L++   ++L+ L  Q  A K +A       C 
Sbjct: 672 NLIGHICAAYSWVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYSYSIDCP 731

Query: 110 LTL 102
           L L
Sbjct: 732 LNL 734


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,009,710
Number of Sequences: 27780
Number of extensions: 269923
Number of successful extensions: 566
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)