Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1414
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    28   1.2  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    27   3.7  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        26   4.9  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      26   6.5  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   6.5  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   8.6  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    25   8.6  
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    25   8.6  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    25   8.6  

>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/64 (21%), Positives = 33/64 (51%)
 Frame = -3

Query: 501 FIYNIREHFLNFANLITLSCHKNKIHKDQTSKIRSILCSRHYFSNKKLADEARDYRYSLH 322
           F+    E+FLN  ++ + S H      +Q ++++ +     ++S + LA++ R    S +
Sbjct: 33  FMLPQEENFLNRPSITSESAHPRGSDLEQETELKRLALEHEHYSLESLAEKLRMDHVSAN 92

Query: 321 TYKY 310
           + K+
Sbjct: 93  SEKF 96


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
 Frame = -3

Query: 399 SILCSRHYFSNKKLADEARDYRYSLHTYKYINTYNSILTSNSRFYEVF*LYIYNIDNAKF 220
           ++  +  YF   +L  + R+Y YSL  + +   + +++     F+     Y   +  AK 
Sbjct: 193 NVRVASRYFKGPELLVDFREYDYSLDIWSFGVMFAALIFKKDTFFRGRDNYDQLVKIAKV 252

Query: 219 -----LFYYFQKEYVLLELVIINI 163
                LF Y QK  ++L+    NI
Sbjct: 253 LGTDELFAYVQKYQIVLDRQYDNI 276


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 132 LTNNNKIVEIQLFLSFVFFLTITKQK 55
           LTN +K+ EIQL    VF + I K K
Sbjct: 69  LTNKSKVNEIQLISIEVFIIGICKHK 94


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 150 SVFIAILTNNNKIVEI-QLFLSFVFFLTITKQKQS 49
           SVF++I+ NN   + + QL LS V ++T      S
Sbjct: 309 SVFVSIMPNNGSKIRVQQLSLSLVEYITFIHPSSS 343


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 275 HDFMKFFNFTFTTLIMPNFYFTIFRKSMCF 186
           + FM+ +N  F TL +P  YFT    +  F
Sbjct: 141 YKFMRLWNAAFGTLCIPLVYFTALNFNYSF 170


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 736 TLSIVVYFKIYLHFLYILGY 677
           T  IVV F +YL  +YI+GY
Sbjct: 328 TEPIVVCFTLYLTVVYIIGY 347


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = -3

Query: 420 DQTSKIRSILCSRHYFSNKKLADEARDYRYSLHTYKYINTYNSILTSNSRF-YEVF*LYI 244
           DQT ++ + +        +       D+  ++H  +YIN  N      S F +  F L +
Sbjct: 51  DQTERLANQVAELQEQQKRLFGPSGADFEPNIHRLRYINYGNPAPFGLSAFAFTTFLLSL 110

Query: 243 YNID 232
           +N++
Sbjct: 111 FNVN 114


>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 339 YRYSLHTYKYINTYNSILTSNSRFYEVF*LYIYNIDNAKFLFYYFQ 202
           YR+ LH Y  IN+ +     ++ F   F  Y   +    F  YYF+
Sbjct: 202 YRFDLHYY--INSTSQPKKHSTYFRNTFIAYGLGLGVTNFALYYFK 245


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 237 IDNAKFLFYYFQKEYVLLELVIINIKNKKSVFIAILTN 124
           IDN+KF+ Y  ++ Y   + +  N  +K++ F+ I  N
Sbjct: 289 IDNSKFINYLIEENY--SKRLEFNFPHKRAAFMEITRN 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,552
Number of Sequences: 5004
Number of extensions: 59800
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)