Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1414
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_27219| Best HMM Match : Cad (HMM E-Value=4)                         28   6.9  
SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)               28   9.1  
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_17200| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = -3

Query: 492  NIREHFLNFANLITLSCHKN--KIHKDQTSKIRSILCSRHYFSNKKLADEARD 340
            N+R+H    A+  +L C K   ++H+D  +++R+ L S H  + K+L+D   +
Sbjct: 1312 NLRQHMAE-ASRTSLKCRKACLQLHEDSKARLRTELESEHQKAIKELSDSIEE 1363


>SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 793

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -3

Query: 501 FIYNIREHFLNFANL---ITLSCHKNKIHK-DQTSKIRSILCSRHYFSNKKLADEARDYR 334
           F   +RE+F   +NL    + S HK   H   + S I    C   + S+ K+  E   Y 
Sbjct: 225 FYDKVREYFSIISNLGVEASTSEHKGYAHVGSEASMIDKNFCVETFLSHNKVLTEVLHYE 284

Query: 333 YSLHTYKYINTYNSI 289
           Y  +    INT  +I
Sbjct: 285 YDPYRGDKINTILTI 299


>SB_27219| Best HMM Match : Cad (HMM E-Value=4)
          Length = 297

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -3

Query: 339 YRYSLHTYKYINTYNSI--LTSNSRFYEVF*LYIYNIDNAKFLFYYFQKEYVLLELVIIN 166
           Y Y+++ Y ++N Y SI    S + +Y +   Y  N+  +  ++Y     Y +     IN
Sbjct: 2   YNYNVNLYYFVNVYYSIDVYYSVNVYYSINVYYSVNVYYSIDVYYSIDVYYSVTVYYSIN 61

Query: 165 IKNKKSVFIAI 133
           +    +V+ +I
Sbjct: 62  VYYSVNVYYSI 72


>SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
          Length = 896

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 501 FIYNIREHFLNFANLITLSCHKNKI-HKDQTSKIRSILCSRHYFSNK 364
           +IYN + H   +  +I++S H + + H  Q    ++I+   HY   K
Sbjct: 428 YIYNPKTHKYCYGRIISISAHCSHVSHLPQVKGCQAIMEKNHYDPRK 474


>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 279 CLSILNCRY-LYICKYVMNTCNL*LRPLTFCC 371
           C ++  CRY L  C+Y++  C   LRP   CC
Sbjct: 185 CYTLRPCRYMLRPCRYMLRPCRYMLRP---CC 213


>SB_17200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 252 VKKLHKIVSCLSILNCRYLYICKYVMN 332
           ++    I +C  I NCRY+  C+Y+ N
Sbjct: 69  IENCRYIENCRYIENCRYIENCRYIEN 95



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 252 VKKLHKIVSCLSILNCRYLYICKYVMN 332
           ++    I +C  I NCRY+  C+Y+ N
Sbjct: 75  IENCRYIENCRYIENCRYIENCRYIEN 101



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 252 VKKLHKIVSCLSILNCRYLYICKYVMN 332
           ++    I +C  I NCRY+  C+Y+ N
Sbjct: 81  IENCRYIENCRYIENCRYIENCRYIEN 107



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 252 VKKLHKIVSCLSILNCRYLYICKYVMN 332
           ++    I +C  I NCRY+  C+Y+ N
Sbjct: 87  IENCRYIENCRYIENCRYIENCRYIEN 113



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 252 VKKLHKIVSCLSILNCRYLYICKYVMN 332
           ++    I +C  I NCRY+  C+Y+ N
Sbjct: 93  IENCRYIENCRYIENCRYIENCRYIEN 119



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 252 VKKLHKIVSCLSILNCRYLYICKYVMN 332
           ++    I +C  I NCRY+  C+Y+ N
Sbjct: 99  IENCRYIENCRYIENCRYIENCRYIEN 125



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 252 VKKLHKIVSCLSILNCRYLYICKYVMN 332
           ++    I +C  I NCRY+  C+Y+ N
Sbjct: 105 IENCRYIENCRYIENCRYIENCRYIEN 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,366,725
Number of Sequences: 59808
Number of extensions: 376537
Number of successful extensions: 847
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)