Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1414
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   7.0  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/67 (19%), Positives = 30/67 (44%)
 Frame = -3

Query: 312 YINTYNSILTSNSRFYEVF*LYIYNIDNAKFLFYYFQKEYVLLELVIINIKNKKSVFIAI 133
           Y N   S++   +R    + L  +  + +  LF+      +++  ++I IK ++S  +  
Sbjct: 197 YENKNGSVILDTARCSMKWTLIEHAFEISTMLFFVLPMTIIIVLYILIAIKLRRSRMLTA 256

Query: 132 LTNNNKI 112
             N N +
Sbjct: 257 TVNRNHL 263



 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 607 IFLYIQGCLSYFSGIIYY 660
           + + I   L+Y SG+ YY
Sbjct: 321 VLIIIYTILTYMSGVFYY 338


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 245 FTTLIMPNFYFTIFRKSMCFWS 180
           F  +IMPN Y  IF      +S
Sbjct: 130 FHNIIMPNVYIRIFPNGSVLYS 151


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 245 FTTLIMPNFYFTIFRKSMCFWS 180
           F  +IMPN Y  IF      +S
Sbjct: 130 FHNIIMPNVYIRIFPNGSVLYS 151


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 229 IINVVNVKLKNFIKS*VACQY*IVG 303
           + N++++K +N  K  + C+  I+G
Sbjct: 327 LYNLMSIKYRNAFKQTICCKTRIIG 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,487
Number of Sequences: 438
Number of extensions: 4507
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)