Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1414
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48200.1 68414.m05381 expressed protein                             29   3.2  
At5g13080.1 68418.m01499 WRKY family transcription factor WRKY D...    28   7.5  
At5g53010.1 68418.m06584 calcium-transporting ATPase, putative         27   9.9  

>At1g48200.1 68414.m05381 expressed protein
          Length = 118

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 159 NKKSVFIAILTNNNKIVEIQLFLSFVFFLTITKQKQSKY 43
           NK ++F++   NNN ++   L +SFV  L +   KQ KY
Sbjct: 3   NKIAMFLSEAMNNNAVINTCLGVSFV-VLGLRSDKQQKY 40


>At5g13080.1 68418.m01499 WRKY family transcription factor WRKY DNA
           binding protein - Solanum tuberosum, EMBL:AJ278507
          Length = 145

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
 Frame = -3

Query: 468 FANLITLSCH-KNKIHK--DQTSKIRSILCSRHYFSNKKLADEARDYRYSLHTYKYIN 304
           +A  ++L  H K ++H+  +++SK+RS  CS+   S+KK   + +  RY+  T   ++
Sbjct: 10  YAPFLSLKSHSKPELHQGEEESSKVRSEGCSKSVESSKK---KGKKQRYAFQTRSQVD 64


>At5g53010.1 68418.m06584 calcium-transporting ATPase, putative 
          Length = 1049

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 195  YVLLELVIINIKNKKSVFIAILTNNNKIVEIQLFLSFVFFLTITK 61
            Y++L LV+IN +    +      N  K++   +F SFVF+L   +
Sbjct: 933  YLVLSLVLINSEKLLKLKHGQTGNAEKMMNTLIFNSFVFYLVFNE 977


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,593,463
Number of Sequences: 28952
Number of extensions: 259878
Number of successful extensions: 573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)