Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1412
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    28   1.2  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   1.5  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    27   2.7  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    27   3.5  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    26   6.2  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    26   6.2  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.2  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   8.2  

>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 718 NSRVIRFEDTARRGVDWAVHLSKNNAGVLRPAQRGQ 611
           NS ++   ++AR   DW V ++ N+  V+  A RGQ
Sbjct: 392 NSAIVAASNSARDMSDWYVRITYNSTPVVMGACRGQ 427


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 663 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 529
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 21/77 (27%), Positives = 34/77 (44%)
 Frame = +3

Query: 21  LRDPNGLRRRVSRFECETQLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFTHNPADG 200
           ++DP  L  R  + EC TQ+V ++ LE   S+   ++     S R  +A+    +N  D 
Sbjct: 94  IKDPRPLSDRRYQQECATQVV-NYLLESGFSQPLGLNNRFMPSTREFAAIFKHLYNKLDP 152

Query: 201 SFXXXXXXXXXXTKCPK 251
           +F          T C K
Sbjct: 153 NFRFGARYEEDVTTCLK 169


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
 Frame = -1

Query: 265 REEPSFGHLVHALGRAAGGAKLPSAG-LCVNASKAEASLAESGKDMLTVEPRESGGSKQC 89
           R  P   H    L  ++    L S G + V++S  E      GK+   V P  +      
Sbjct: 277 RRRPDHNH-TSTLDASSSNTSLASTGPMTVSSSTVE----RKGKEASEVNPNSTSSVTFS 331

Query: 88  DFTSCVSHSKRETRRRSPFGSRR 20
           DF + +S S+    ++S  G  R
Sbjct: 332 DFAAAISRSRCSRCKKSKKGCDR 354


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -2

Query: 276 TAQYERNPVSDIWFMHSAERPVVRSYHPRDYA*TPLRPKPA*PNPAR 136
           + Q++  P   ++F  ++ +PV++  +    A TP+  KP+ P+  R
Sbjct: 120 SVQFKFIPTDPLYFDRASSKPVLQFPYSSVAALTPVPKKPSKPSKPR 166


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 217 AGGAKLPSAGLCVNASKAEASLAESGKDMLTVEPRESGGSKQ 92
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 546  SPYAY*TSGSSQLLPFCSTRGF 611
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 685 RRGVDWAVHLSKNNAGVLRPAQRGQKPRVEQKGKS 581
           ++  D A+++S++N      A+RG K R   KGKS
Sbjct: 21  KQHTDTALNISQDNKTSSSSAKRGAKGRRGTKGKS 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,565
Number of Sequences: 5004
Number of extensions: 60432
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)