Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1412
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.69
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 30 1.6
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 30 2.1
07_03_0846 - 21983581-21986055 29 2.8
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.7
05_03_0596 - 16005622-16006122 29 3.7
03_05_0183 - 21681673-21682524 29 3.7
10_08_0788 + 20553587-20553726,20554131-20554196,20554695-205549... 29 4.9
03_05_0560 + 25636969-25637227,25637744-25637793,25637813-25638748 28 6.4
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 31.5 bits (68), Expect = 0.69
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -1
Query: 160 ASLAESGKDMLTVEPRESGGSKQCDFTSCVSHSKRETRRRSPFGS 26
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = -3
Query: 395 EAKFAKRWIVHPSKGNVSWVRPS*DRLVLPY*WLVVAIVILL 270
EA A+ VHP+ + VR S DRL+ PY L VA +LL
Sbjct: 563 EAALAQAAAVHPNHPTLKIVRISEDRLLSPYKELSVANKLLL 604
>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -3
Query: 464 LWQPSVHSDVAF*SFDVGSSYHCEAKFAKRWIVHPSKGNVSWVR--PS*DRL 315
LW+ V S A S G+ C+ + W +HP ++ VR P DRL
Sbjct: 1109 LWKVEVPSLTAIRSLSTGTVLGCQVEKHMNWYLHPEHVSILLVRLMPQLDRL 1160
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 18 DLRDPNGLRRRVSRFECETQLVKSHCLEPPDSRGSTVSISLPDSARLASA 167
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 247 GHLVHALGR-AAGGAKLPSAGLCVNASKAEASLA 149
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>05_03_0596 - 16005622-16006122
Length = 166
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 375 LDCSPIKRERELG*TVVRQVSFTLLMACRCDSNTAQYERNPVSDI 241
LD IKR R G + + L+ CR T + +R P++ +
Sbjct: 15 LDLKEIKRARWTGMLAITTLRMILVRCCRTQRRTVKVKRRPINKL 59
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 457 SQAFIATLLFDPSMSALPIIAKQNSPS 377
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>10_08_0788 +
20553587-20553726,20554131-20554196,20554695-20554926,
20555033-20555237,20555335-20555441
Length = 249
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -2
Query: 615 DRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIKS---FSKRCQKSYHRDNWLVAAK 451
+R L W + A +++ FSTH Y I C KSYH N+++ +K
Sbjct: 125 ERGLEWMR---AEVVEAFSTHSGANVVEYELEDISHQCLIFDDCAKSYHHYNFIMKSK 179
>03_05_0560 + 25636969-25637227,25637744-25637793,25637813-25638748
Length = 414
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 592 FAPREVSVLAELALGHLRYSLTDVPPSQLPAWQCPRTGSRG 714
F PRE+S + HLR S T W+C RT + G
Sbjct: 199 FGPREISAMRNHVPVHLRQSYTTFELIAAAVWKC-RTAALG 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,762,257
Number of Sequences: 37544
Number of extensions: 451218
Number of successful extensions: 1292
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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