Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1412
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF025462-3|AAB71002.1|  309|Caenorhabditis elegans Hypothetical ...    29   4.4  
U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    28   5.8  
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    28   5.8  
U23529-7|AAL32211.1|  622|Caenorhabditis elegans G-protein-linke...    28   5.8  
AL132902-8|CAC14423.2|  699|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF117301-1|AAF26202.1|  622|Caenorhabditis elegans G protein-lin...    28   5.8  
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    28   5.8  
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    28   5.8  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical
           protein H42K12.3 protein.
          Length = 522

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 151 AESGKDMLTVEPRESGGSKQCDFTSCVSHSKRETRRRSPFGSRRSM 14
           A+S + +   EP E+  S   D+T C   ++R+ RRR     R+ +
Sbjct: 368 ADSSRAIEPQEPEETYFSDWSDWTPCTKSNERQVRRRRCLNLRKCL 413


>AF025462-3|AAB71002.1|  309|Caenorhabditis elegans Hypothetical
           protein K10F12.4a protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 583 FCPFAPREVSVLAELALGHLRYSLTDVPPSQLPAWQCPRT 702
           FCP+A R   VL  LA  ++   + +V P + P W  P++
Sbjct: 106 FCPYAQR---VLIYLAKKNIPVEVVNVNPDRSPNWYLPKS 142


>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 371 IVHPSKGNVSWVRPS*DRLVLPY*WLVVAIVILLSTRGTQFRTFGSCTRPSGRWCEA 201
           + H +K  + W  P+  +L++   WL+ AI+  +   G Q  T G  T  SG  C A
Sbjct: 128 VCHTAK-YLKWQSPTKTQLLIVMSWLLPAIIFGIMIYGWQAMT-GQSTSMSGAECSA 182


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 371 IVHPSKGNVSWVRPS*DRLVLPY*WLVVAIVILLSTRGTQFRTFGSCTRPSGRWCEA 201
           + H +K  + W  P+  +L++   WL+ AI+  +   G Q  T G  T  SG  C A
Sbjct: 128 VCHTAK-YLKWQSPTKTQLLIVMSWLLPAIIFGIMIYGWQAMT-GQSTSMSGAECSA 182


>U23529-7|AAL32211.1|  622|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform c protein.
          Length = 622

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 371 IVHPSKGNVSWVRPS*DRLVLPY*WLVVAIVILLSTRGTQFRTFGSCTRPSGRWCEA 201
           + H +K  + W  P+  +L++   WL+ AI+  +   G Q  T G  T  SG  C A
Sbjct: 128 VCHTAK-YLKWQSPTKTQLLIVMSWLLPAIIFGIMIYGWQAMT-GQSTSMSGAECSA 182


>AL132902-8|CAC14423.2|  699|Caenorhabditis elegans Hypothetical
           protein Y71A12B.9 protein.
          Length = 699

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -1

Query: 718 NSRVIRFEDTARRGVDWAVHLSKNNAGVL 632
           N R  +F+DT  +GVD A H+SK  A VL
Sbjct: 662 NGRWFQFDDTVVKGVDEA-HVSKQKAYVL 689


>AF117301-1|AAF26202.1|  622|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1c protein.
          Length = 622

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 371 IVHPSKGNVSWVRPS*DRLVLPY*WLVVAIVILLSTRGTQFRTFGSCTRPSGRWCEA 201
           + H +K  + W  P+  +L++   WL+ AI+  +   G Q  T G  T  SG  C A
Sbjct: 128 VCHTAK-YLKWQSPTKTQLLIVMSWLLPAIIFGIMIYGWQAMT-GQSTSMSGAECSA 182


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 371 IVHPSKGNVSWVRPS*DRLVLPY*WLVVAIVILLSTRGTQFRTFGSCTRPSGRWCEA 201
           + H +K  + W  P+  +L++   WL+ AI+  +   G Q  T G  T  SG  C A
Sbjct: 128 VCHTAK-YLKWQSPTKTQLLIVMSWLLPAIIFGIMIYGWQAMT-GQSTSMSGAECSA 182


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 371 IVHPSKGNVSWVRPS*DRLVLPY*WLVVAIVILLSTRGTQFRTFGSCTRPSGRWCEA 201
           + H +K  + W  P+  +L++   WL+ AI+  +   G Q  T G  T  SG  C A
Sbjct: 128 VCHTAK-YLKWQSPTKTQLLIVMSWLLPAIIFGIMIYGWQAMT-GQSTSMSGAECSA 182


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -1

Query: 250 FGHLVHALGRAAGGAKLPSAGLCVNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSCV 71
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 70  SH--SKRETRRRSP 35
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,710,190
Number of Sequences: 27780
Number of extensions: 349490
Number of successful extensions: 859
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)