Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1412
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   0.76 
At5g27670.1 68418.m03317 histone H2A, putative similar to histon...    29   2.3  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.1  
At4g34370.1 68417.m04883 IBR domain-containing protein similar t...    29   4.1  
At2g07738.1 68415.m00989 hypothetical protein                          28   5.4  
At3g58900.1 68416.m06564 F-box family protein contains F-box dom...    28   7.1  
At1g64340.1 68414.m07291 hypothetical protein                          28   7.1  
At1g14740.1 68414.m01762 expressed protein                             28   7.1  
At5g52870.1 68418.m06562 expressed protein similar to unknown pr...    27   9.4  
At4g39070.1 68417.m05533 zinc finger (B-box type) family protein...    27   9.4  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   9.4  

>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 469 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 362
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At5g27670.1 68418.m03317 histone H2A, putative similar to histone
           H2A Lycopersicon esculentum SP|P25469, Pisum sativum
           SP|P25470, Petroselinum crispum SP|P19177; contains Pfam
           profile PF00125 Core histone H2A/H2B/H3/H4
          Length = 150

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = -1

Query: 271 SVREEPSFGHLVHALGRAAGGAKLPSAGLCVNASKAEASLAESGKDMLTVEPRES 107
           ++R +   G L+H +  A+GG  LP+    +   K+ AS +++ K   T  P+++
Sbjct: 97  AIRNDEELGRLLHGVTIASGGV-LPNINPVLLPKKSTASSSQAEKASATKSPKKA 150


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 624 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 511
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At4g34370.1 68417.m04883 IBR domain-containing protein similar to
           SP|Q94981 Ariadne-1 protein (Ari-1) {Drosophila
           melanogaster}; contains Pfam profile PF01485: IBR domain
          Length = 597

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -1

Query: 148 ESGKDMLTVEPRESGGSKQCDFTSCVSHSKRETRRRSPFGSRRSMLSV 5
           +SG   +T  P ++ GS+  + T C S  KR  +  S   ++ ++L +
Sbjct: 540 DSGTSGVTSRPEQASGSRSSEDTICSSSQKRPKKEGSFLNNKVTLLDL 587


>At2g07738.1 68415.m00989 hypothetical protein
          Length = 88

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = -1

Query: 271 SVREEPS----FGHLVHALGRAAGGAKLPSAGLCVNASKAEASL 152
           SVR EPS    F HL   +G++  G+++PS G     S++++ +
Sbjct: 44  SVRLEPSCIQDFDHLAEEIGKSYIGSRVPSKGSSSTKSESDSQV 87


>At3g58900.1 68416.m06564 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 327

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -2

Query: 594 KRAKAGLIQMFSTHRDCESTAYRSFSIKSFSKRCQ---KSYHRDNWL 463
           KR K G++Q F    D     +    IK+FS +C+    S H D W+
Sbjct: 58  KREKEGILQSFMDFVDRVLDLHGDSLIKTFSLKCKTGVDSDHVDRWI 104


>At1g64340.1 68414.m07291 hypothetical protein
          Length = 265

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 549 DCESTAYRSFSIKSFSKR 496
           DCEST Y SF + SF+++
Sbjct: 124 DCESTLYDSFELNSFNRQ 141


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -1

Query: 211 GAKLPSAGLCVNASKAEASLAESGKDMLTVEPRESGGSK--QCDFTSCVSHSKRETRRRS 38
           G +L  + LC N+ K   SL + GK+++T     S   K  + DF +    +   ++R++
Sbjct: 67  GNELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYDDKWVERDFFNLREMNPNSSKRKA 126


>At5g52870.1 68418.m06562 expressed protein similar to unknown
           protein (gb|AAF24565.1)
          Length = 326

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -2

Query: 630 GQLSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIKSFSKRCQKSYH 478
           G  S  R L  S+ A A +  M   +R  ES   +   I+S    C+KS+H
Sbjct: 216 GMRSVRRQLGKSRSASAAIGGMSPANRIDESLQVQQDGIQSAILHCKKSFH 266


>At4g39070.1 68417.m05533 zinc finger (B-box type) family protein
           salt-tolerance protein - Arabidopsis thaliana,
           PID:e224078
          Length = 242

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +1

Query: 571 DQASFCPFAPREVSVLAELALGHLRYSLTDVPPSQLPAWQCPRTGSR 711
           D+A+ C    R V    +LA  HLR+SLT   P+   A  C   G R
Sbjct: 20  DEAALCNGCDRHVHFANKLAGKHLRFSLTS--PTFKDAPLCDICGER 64


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 168 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 28
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,065,879
Number of Sequences: 28952
Number of extensions: 336371
Number of successful extensions: 919
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)