Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1409
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    28   0.96 
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    28   0.96 
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    27   2.2  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   6.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.0  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    25   9.0  

>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 530 IFKGNQCKIIINTHEMNQHKIYINLENIYHVEYKNISIN 414
           I+K N  K   + HE   H+  ++L + Y  ++KN++ N
Sbjct: 100 IYKSNSTKRSHSRHEEIHHQQQLHLNHQYQHQHKNVAAN 138


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 447 NIFKVYIDFMLVHLVSIYYYFALISFKY 530
           ++  VYI  ++  LVS++Y+++L +F Y
Sbjct: 105 SLISVYIGIVISLLVSLFYFYSLPNFPY 132


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 141 IISHGLCSSGIFCLANINYERLHSRSLYINRGMINFI 251
           ++S GL SSGI  L  I    +     YI  GM++ +
Sbjct: 105 LVSAGLISSGIMTLIQIARVHIPKTKYYIGTGMLSVL 141


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 500  INTHEMNQHKIYINLENIYHVEYKNISINYN 408
            +NT    + K   NL NI++ EY N SI  N
Sbjct: 1201 LNTSRGFETKYLYNLMNIWNPEYTNDSIKSN 1231


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 447  NIFKVYIDFMLVHLVSIYYYF 509
            +IFK      L HL+SIYY+F
Sbjct: 1394 DIFKSMYVLSLDHLLSIYYWF 1414


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +3

Query: 438 NMVNIFKVYID-FMLVHLV 491
           N+VNIF +YID F  +H+V
Sbjct: 95  NIVNIFDLYIDQFRCLHIV 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,639,681
Number of Sequences: 5004
Number of extensions: 23682
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)