Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1407
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 31 0.14
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 28 1.3
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 27 2.3
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 27 3.1
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 27 3.1
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.3
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 7.1
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 25 7.1
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 7.1
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 9.3
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz... 25 9.3
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 31.1 bits (67), Expect = 0.14
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -1
Query: 584 ARKIRGRPENAGPDPVRNVRRFSRVYI 504
AR I GRPEN G ++N+ R S+V++
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKVFL 240
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 27.9 bits (59), Expect = 1.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 401 SGCGRCRVWSMFVRYVRFSD 460
+GCG+ VW +VR+V F +
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -2
Query: 163 FRTISPFYRIPWNSNAQAEKKTLPGPLGDVFRPLW-VTPSNTR 38
F + FY W+ + KK L LG+ F W PSN++
Sbjct: 86 FLDVVRFYMSGWHIRPRGVKKPLNPILGETFTGFWKFPPSNSK 128
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 642 NGGRTESCRSRTKRTDTTYG*EDPRKAGERGSGSSPKRK 526
NGG + S + + G ++ G GSGSS RK
Sbjct: 11 NGGTNQGMESSSANSPEMNGTQNSMSVGMSGSGSSQNRK 49
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = -1
Query: 605 NEPTRLTARKIRGRPENAGPDPVRNVRRFSRVYIKYIQFLRPHYIKILNR*NEHNARTST 426
++P+R TA K + + ++ GP+ R + F+ + F + I I+ R H+ +
Sbjct: 354 SKPSRPTAPKPKFKQDSLGPNQARAMYSFAGEQPGDLSFQKGDIIDIVERSGSHDDWWTG 413
Query: 425 RPGTGRIRFPS 393
R G FP+
Sbjct: 414 RIGYREGIFPA 424
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -3
Query: 180 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSATSSGHFGLPRRT 43
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 39 RVFDGVTQSGLKTSPRGPGRV 101
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 438 TNIDQTRHRPHPLPVQTRHAPV 373
+N+D + PHP P Q PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 39 RVFDGVTQSGLKTSPRGPGRV 101
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 438 CVMFVLAI*YFNIMRPQKLYIFNIHSRKSSYVSDWIRTR 554
C F L++ N+ P + I H R S V DW TR
Sbjct: 138 CAQFALSL--SNVQDPTVMQINTSHHRFRSEVKDWGFTR 174
>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.0 bits (52), Expect = 9.3
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = +3
Query: 474 IMRPQKLYIFNIHSRKSSYVSDWIRTR 554
I+ +K++++++H S+ DWI +
Sbjct: 259 ILNNKKVFLYDVHPLHSTSAEDWIHMK 285
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,328
Number of Sequences: 5004
Number of extensions: 59155
Number of successful extensions: 186
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -