Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1407
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    29   2.1  
X15242-1|CAA33320.1|  441|Caenorhabditis elegans beta-tubulin pr...    29   2.8  
U70844-1|AAB09092.1|  441|Caenorhabditis elegans Mechanosensory ...    29   2.8  
AF039047-11|AAB94230.1|  354|Caenorhabditis elegans Prion-like-(...    29   3.7  
Z68882-9|CAD56233.1|  683|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z68882-8|CAD56234.1|  738|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z35597-5|CAA84648.1|  450|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    28   6.5  
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    28   6.5  
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    28   6.5  
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    28   6.5  
Z77131-2|CAB00853.4|  444|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -3

Query: 447  T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 334
            T +++ID T H PHP+ VQ   T+   V+   P   V+ P+
Sbjct: 904  TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944


>X15242-1|CAA33320.1|  441|Caenorhabditis elegans beta-tubulin
           protein.
          Length = 441

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 498 IFNIHSRKSSYVSDWIRTRVLRPSADLPSR 587
           + NI ++ SSY  DWI   V     D+P R
Sbjct: 330 MLNIQNKNSSYFVDWIPNNVKTAVCDIPPR 359


>U70844-1|AAB09092.1|  441|Caenorhabditis elegans Mechanosensory
           abnormality protein7 protein.
          Length = 441

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 498 IFNIHSRKSSYVSDWIRTRVLRPSADLPSR 587
           + NI ++ SSY  DWI   V     D+P R
Sbjct: 330 MLNIQNKNSSYFVDWIPNNVKTAVCDIPPR 359


>AF039047-11|AAB94230.1|  354|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 51
           protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -3

Query: 432 IDQTRHRPHPLPVQTRHAP--VLRANPYSEVTDPICRLPLPTLFYRLEALHLGD 277
           +D   + P P P Q  H P   +R NP      P+ + P+  L   L A H+GD
Sbjct: 53  VDLESNAPPPAPRQQHHVPPSAVRPNPMPP-QRPVAQQPVRAL-SALHAAHIGD 104


>Z68882-9|CAD56233.1|  683|Caenorhabditis elegans Hypothetical
           protein C47E12.6b protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 549 TRVLRPSADLPSRKSCRFVSC 611
           ++  RP+AD+P    CR +SC
Sbjct: 531 SKTFRPTADMPDPNVCRLLSC 551


>Z68882-8|CAD56234.1|  738|Caenorhabditis elegans Hypothetical
           protein C47E12.6a protein.
          Length = 738

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 549 TRVLRPSADLPSRKSCRFVSC 611
           ++  RP+AD+P    CR +SC
Sbjct: 586 SKTFRPTADMPDPNVCRLLSC 606


>Z35597-5|CAA84648.1|  450|Caenorhabditis elegans Hypothetical
           protein C36E8.5 protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 477 MRPQKLYIFNIHSRKSSYVSDWIRTRVLRPSADLPSR 587
           MR     + N+ ++ SSY  +WI   V     D+P R
Sbjct: 323 MREVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR 359


>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 452 NEHNARTSTRPGTGRIRFPSKPDT 381
           NE+   TS++PG  R+  P+K DT
Sbjct: 561 NENRGETSSQPGRDRLAPPNKTDT 584


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 452 NEHNARTSTRPGTGRIRFPSKPDT 381
           NE+   TS++PG  R+  P+K DT
Sbjct: 530 NENRGETSSQPGRDRLAPPNKTDT 553


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 452 NEHNARTSTRPGTGRIRFPSKPDT 381
           NE+   TS++PG  R+  P+K DT
Sbjct: 561 NENRGETSSQPGRDRLAPPNKTDT 584


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 452 NEHNARTSTRPGTGRIRFPSKPDT 381
           NE+   TS++PG  R+  P+K DT
Sbjct: 530 NENRGETSSQPGRDRLAPPNKTDT 553


>Z77131-2|CAB00853.4|  444|Caenorhabditis elegans Hypothetical
           protein C54C6.2 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 477 MRPQKLYIFNIHSRKSSYVSDWIRTRVLRPSADLPSR 587
           MR     + N+ ++ SSY  +WI   V     D+P R
Sbjct: 323 MREVDDQMMNVQNKNSSYFVEWIPNNVKTAVCDIPPR 359


>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = -2

Query: 214 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 86
           K+ +E  D A N +      FR   I+PF   P+ +N Q   + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482


>U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical
           protein C04E7.4 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 198 IRTPPQMRCSSRSEPYLPSIGFHGT 124
           I T  Q + SS  +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,592,873
Number of Sequences: 27780
Number of extensions: 342009
Number of successful extensions: 1070
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)