Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1407
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.8  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   7.7  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   7.7  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 93  PDLSATSSGHFGLPRRTLVFK 31
           PDL+ TS G  GLP   L  +
Sbjct: 336 PDLAGTSQGSAGLPSAILAMR 356


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 400 KRMRPVPGLVDVRALCSF*RFSILI*CGLKNCI 498
           K +RPV    DV  +C   + S LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 400 KRMRPVPGLVDVRALCSF*RFSILI*CGLKNCI 498
           K +RPV    DV  +C   + S LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -2

Query: 193 DTAANAVLFAFRTISPFYRIPWNSNAQAEKKTLPGPLGDVF 71
           D  ++ ++ A   I  FY  P  +  +  K+  P P  D++
Sbjct: 198 DFGSSVLIGAPNEIDKFYGTPGYTAPEVIKQNRPTPAADIY 238


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 162 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 79
           SE   P+   HG R  RQ+ +   D  +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 141 IGFHGTRTLRQKRKLFPDLSATSSGHFG 58
           +GFHG R  R    ++   S+T    FG
Sbjct: 257 MGFHGMRGKRDAAGIYGSNSSTVGTIFG 284


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 141 IGFHGTRTLRQKRKLFPDLSATSSGHFG 58
           +GFHG R  R    ++   S+T    FG
Sbjct: 257 MGFHGMRGKRDAAGIYGSNSSTVGTIFG 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,825
Number of Sequences: 438
Number of extensions: 4555
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)