Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1407
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76965.1 68414.m08961 glycine-rich protein                          29   2.0  
At5g57840.1 68418.m07233 transferase family protein similar to a...    29   2.6  
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    29   2.6  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   3.5  
At5g42370.1 68418.m05159 expressed protein                             29   3.5  
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila...    28   4.6  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    28   4.6  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    28   4.6  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   4.6  
At3g29765.1 68416.m03762 hAT dimerisation domain-containing prot...    28   6.1  
At5g22390.1 68418.m02612 expressed protein                             27   8.1  
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic...    27   8.1  
At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    27   8.1  
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden...    27   8.1  
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    27   8.1  

>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 422 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 327
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At5g57840.1 68418.m07233 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase from
           Dianthus caryophyllus [gi:2239091]
          Length = 443

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 297 EALHLGDLLRIWVRTARHLHVHPSPEFSRSAESIRTPP 184
           EA  LG ++  W  TAR L V  +P   R+    R PP
Sbjct: 157 EATSLGYIMEAWSLTARGLLVKLTPFLDRTVLHARNPP 194


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -3

Query: 261 VRTARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHG 127
           +RTAR  H  PS    RS    R+  +   S R   Y PS G  G
Sbjct: 167 LRTARGRHKSPSYSPRRSVSCSRSRSRSYSSDRGRSYSPSYGRRG 211


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 209 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 75
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 148 PFYRIPWNSNAQAEKKTLPGPLGDVFRPL-WVTPSNTR 38
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
           to D-E-A-D box protein [Drosophila melanogaster]
           GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 512

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 207 RTLKIQVRDVRGDVAPFVPISAAGLQGEEPLVDRIM*VREVGKLD 341
           R L +QV+DV   +AP V +S     G+  +   I  + +  KLD
Sbjct: 104 RDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLD 148


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 488 LRPHYIKILNR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 312
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 488 LRPHYIKILNR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 312
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 204 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 106
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At3g29765.1 68416.m03762 hAT dimerisation domain-containing protein
          Length = 536

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 288 HLGDLLRIWVRTARHLHVHP 229
           HLGDL R+ V T +HL  HP
Sbjct: 441 HLGDLARVMVETRKHLS-HP 459


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 83  ERSGKSFLFCLSVRVPWNPIEG 148
           + S KSFL  LS   PWNP +G
Sbjct: 17  DNSPKSFLDTLSSSSPWNPSKG 38


>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
           to low affinity calcium antiporter CAX2 (GI:1488267)
           [Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 441

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 11  SIIVPSSLKTSVRRGNPKWPEDVAERSGKSFLFC--LSVRVPWNPI 142
           S++   SL TS  +  PK P++    S K  +FC  L++ +P+ P+
Sbjct: 41  SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86


>At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein similar to SP|Q13144
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Homo sapiens};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 676

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -3

Query: 165 RSEPYLPSIGFHGTRTLRQKRK-LFPDLSATS--SGHFG 58
           R+ PY+P + F G RTL+ +R+ ++    AT   S H G
Sbjct: 288 RTFPYVPDMKFSGNRTLKLERQGIYKASDATQLPSAHVG 326


>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
           identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
           thaliana}
          Length = 449

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 498 IFNIHSRKSSYVSDWIRTRVLRPSADLPSR 587
           I NI ++ SSY  +WI   V     D+P +
Sbjct: 331 ILNIQNKNSSYFVEWIPNNVKSSVCDIPPK 360


>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
           DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 246 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 157
           H H   +P+ S S  S+RTPP  R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,933,706
Number of Sequences: 28952
Number of extensions: 329000
Number of successful extensions: 1015
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)