Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1406
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       32   0.004
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.0  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   7.9  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   7.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 32.3 bits (70), Expect = 0.004
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = +3

Query: 300 SEVTRIKKKLQIQITELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTL 479
           +E+ R K +  IQ  + +L L+V  +T++      KK S  L ++      + +QLQ+T 
Sbjct: 135 AELGRKKLEQAIQQLQEQLQLNVIQQTHLLQTADKKKASAPLQQLALQQQRLIQQLQITQ 194

Query: 480 DQYGVAQ 500
            QY + Q
Sbjct: 195 SQYLLQQ 201


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 298 FNLVSASTTRAFSCSFRCL 242
           FN+    TT+ F C   C+
Sbjct: 446 FNVTDGETTKTFCCKGYCM 464


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 169 RTQPSISVSAVPHLAASFGLLVGGSEFLSLV 77
           +T+ + S++A   L    GLL GGS   +L+
Sbjct: 283 KTEDNESLNAARMLIRQEGLLCGGSSGAALI 313


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 448 MRSRGSCR*LSTSTESPSAGSVTH 519
           M + G CR  ST +  P+A  +++
Sbjct: 108 MSADGGCRNFSTCSSHPTAAFISY 131


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 448 MRSRGSCR*LSTSTESPSAGSVTH 519
           M + G CR  ST +  P+A  +++
Sbjct: 107 MSADGGCRNFSTCSSHPTAAFISY 130


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 388 SMLVLLATSRESSSSVIWICNFFLMRV 308
           + LV  +   E   S IW C FF M +
Sbjct: 359 AFLVYPSAVLELPGSSIWSCLFFFMLI 385


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 388 SMLVLLATSRESSSSVIWICNFFLMRV 308
           + LV  +   E   S IW C FF M +
Sbjct: 412 AFLVYPSAVLELPGSSIWSCLFFFMLI 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,004
Number of Sequences: 438
Number of extensions: 2375
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)