Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1402
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz...    26   4.8  
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    25   8.5  

>SPBC342.04 |||adhesion regulating molecule protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 291

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 394 DAF*LVSFIQLKTQF*RDNVKNPEDPFVITDIECFF 287
           DA+ L+ F   K    R++++NPED  ++   EC F
Sbjct: 34  DAYGLIHFQWAK----RNDLENPEDDIIVFSSECTF 65


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 178 NQRPSESLLNLMKYNNNFFKPV 243
           NQ+P E+ ++L+K N + FK +
Sbjct: 98  NQKPGETRMDLLKANISIFKEI 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,536
Number of Sequences: 5004
Number of extensions: 56084
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)