Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1402
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11410.1 68416.m01392 protein phosphatase 2C, putative / PP2C...    31   1.0  
At3g08010.1 68416.m00978 expressed protein                             30   1.8  
At4g38830.1 68417.m05497 protein kinase family protein contains ...    27   9.8  
At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /...    27   9.8  

>At3g11410.1 68416.m01392 protein phosphatase 2C, putative / PP2C,
           putative identical to protein phosphatase 2C (PP2C)
           GB:P49598 [Arabidopsis thaliana]; contains Pfam profile
           PF00481: Protein phosphatase 2C; identical to cDNA
           protein phosphatase 2C GI:633027
          Length = 399

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = -3

Query: 599 TSRA--KRQMHLRLRIIIITNSKMTKMLKRTRSLFKLH-IVLSTVEVNLRLQEFYREKNK 429
           TSRA  +R++ L   I I+ +S +   L+  R   K   +VLST+  NL L    R +NK
Sbjct: 21  TSRASLRRRLDLLPSIKIVADSAVAPPLENCRKRQKRETVVLSTLPGNLDLDSNVRSENK 80

Query: 428 HANNNYSTS 402
            A +  + S
Sbjct: 81  KARSAVTNS 89


>At3g08010.1 68416.m00978 expressed protein
          Length = 374

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 376 KPIKMHHIWDVE*LLLACLFFSR 444
           KPIK HH++  E LL  C F SR
Sbjct: 27  KPIKTHHLFSSETLLKRCRFVSR 49


>At4g38830.1 68417.m05497 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 665

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 497 LHIVLSTVEVNLRLQEFYRE-KNKHANNNYSTSQI 396
           L IVL  V + LR +E  R  +NKH N N ST  +
Sbjct: 296 LFIVLLVVFLKLRRKENIRNSENKHENENISTDSM 330


>At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from
           (Glycine max); contains PF00295: Glycosyl hydrolases
           family 28 (polygalacturonases)
          Length = 491

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/46 (23%), Positives = 27/46 (58%)
 Frame = -3

Query: 536 MTKMLKRTRSLFKLHIVLSTVEVNLRLQEFYREKNKHANNNYSTSQ 399
           +T    R + L  + ++L+ + ++      ++EK+KH N+N+ +S+
Sbjct: 2   LTSTYNRNQVLGFMTLILTLMSLSEARNHHHKEKHKHNNHNHHSSK 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,538,434
Number of Sequences: 28952
Number of extensions: 276930
Number of successful extensions: 520
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)