Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1401
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 31 0.90
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 0.90
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 2.7
05_06_0098 + 25560158-25560925 29 3.6
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 4.8
05_02_0120 - 6797954-6798970,6799466-6799951 29 4.8
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 4.8
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 8.4
12_02_0077 - 13288916-13289659,13289689-13289691 28 8.4
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 28 8.4
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 8.4
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647... 28 8.4
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 543 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 689
G+ PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -1
Query: 157 TNIDQTRH------RPHPLPVQTRHAPVLRANP 77
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 127 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 38
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>05_06_0098 + 25560158-25560925
Length = 255
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 136 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLE 14
HRP P P + P L +P + V I P PT F + +
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQAD 71
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 121 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 8
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>05_02_0120 - 6797954-6798970,6799466-6799951
Length = 500
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Frame = +1
Query: 94 PGRVGFGREADAAGA-----GSGRCSCVMFVLAS*YFNIMRPQKLYIFNMTLAKIVLRLD 258
PGR G GRE A G G GR +CV A ++ L F + L D
Sbjct: 419 PGRFGAGREEGAGGLAYTAFGGGRHACVGEAFAYMQIKVIWSHLLRNFELQLVSPFPETD 478
Query: 259 W 261
W
Sbjct: 479 W 479
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 133 RPHPLPVQTRHAPVLRANPYSEVTDP 56
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -2
Query: 159 ARTSTRPGTGRIRFPSKPDTPRSSE 85
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 693 ESSSTGSSFPADSPKPVPLAVVSLDSR 613
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 349 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 477
C T RS N H + CL+ +H G NVI +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 147 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 61
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
>04_04_0433 +
25163111-25163471,25163943-25164154,25164420-25164701,
25164794-25164916,25165511-25165664,25165754-25165965,
25166143-25166212,25166294-25166424
Length = 514
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 349 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 477
CT++ +R A W G G L HC P V+S +CS
Sbjct: 26 CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,281,306
Number of Sequences: 37544
Number of extensions: 453463
Number of successful extensions: 1413
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1413
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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