Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1401
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 31 1.1
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 31 1.1
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 31 1.1
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 31 1.1
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 3.3
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 3.3
AY349017-1|AAQ55497.1| 474|Caenorhabditis elegans NHR-91A protein. 28 5.7
AL132841-4|CAB60329.2| 474|Caenorhabditis elegans Hypothetical ... 28 5.7
AF273835-1|AAG15183.1| 476|Caenorhabditis elegans nuclear recep... 28 5.7
AF273834-1|AAG15182.1| 475|Caenorhabditis elegans nuclear recep... 28 5.7
AF273833-1|AAG15181.1| 475|Caenorhabditis elegans nuclear recep... 28 5.7
Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical pr... 27 9.9
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -2
Query: 336 SRTKRNRHDLTARKIRGRPENAGPDPVQT*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 163
S KR L R+ RPE + D E + +R + +KI LT NE+
Sbjct: 506 SMKKRIARALIRRRSTTRPERGSSS--NSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 563
Query: 162 NARTSTRPGTGRIRFPSKPDT 100
TS++PG R+ P+K DT
Sbjct: 564 RGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -2
Query: 336 SRTKRNRHDLTARKIRGRPENAGPDPVQT*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 163
S KR L R+ RPE + D E + +R + +KI LT NE+
Sbjct: 475 SMKKRIARALIRRRSTTRPERGSSS--NSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 532
Query: 162 NARTSTRPGTGRIRFPSKPDT 100
TS++PG R+ P+K DT
Sbjct: 533 RGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -2
Query: 336 SRTKRNRHDLTARKIRGRPENAGPDPVQT*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 163
S KR L R+ RPE + D E + +R + +KI LT NE+
Sbjct: 506 SMKKRIARALIRRRSTTRPERGSSS--NSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 563
Query: 162 NARTSTRPGTGRIRFPSKPDT 100
TS++PG R+ P+K DT
Sbjct: 564 RGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -2
Query: 336 SRTKRNRHDLTARKIRGRPENAGPDPVQT*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 163
S KR L R+ RPE + D E + +R + +KI LT NE+
Sbjct: 475 SMKKRIARALIRRRSTTRPERGSSS--NSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 532
Query: 162 NARTSTRPGTGRIRFPSKPDT 100
TS++PG R+ P+K DT
Sbjct: 533 RGETSSQPGRDRLAPPNKTDT 553
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 166 T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 53
T +++ID T H PHP+ VQ T+ V+ P V+ P+
Sbjct: 904 TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 382 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 480
W+ G C+ + K CDG + C QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 382 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 480
W+ G C+ + K CDG + C QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299
>AY349017-1|AAQ55497.1| 474|Caenorhabditis elegans NHR-91A protein.
Length = 474
Score = 28.3 bits (60), Expect = 5.7
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Frame = +1
Query: 307 KVVSVSFRARSARFCTTAVQRSAQN---WHGQGESDCLIKTKHCDGPRGC*-RNVIS-AQ 471
K + + A + C +RS QN +H ++ C I ++ + + C R IS
Sbjct: 106 KSTGLHYGAATCEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQNRNRCQSCRFRKCISKGM 165
Query: 472 CSECQREEIQASGVNGGSNYDSLKVAKCLV 561
+E RE+ G NG S Y + K + ++
Sbjct: 166 LTEAVREDRMPGGRNGNSIYSNYKQRRSII 195
>AL132841-4|CAB60329.2| 474|Caenorhabditis elegans Hypothetical
protein Y15E3A.1a protein.
Length = 474
Score = 28.3 bits (60), Expect = 5.7
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Frame = +1
Query: 307 KVVSVSFRARSARFCTTAVQRSAQN---WHGQGESDCLIKTKHCDGPRGC*-RNVIS-AQ 471
K + + A + C +RS QN +H ++ C I ++ + + C R IS
Sbjct: 106 KSTGLHYGAATCEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQNRNRCQSCRFRKCISKGM 165
Query: 472 CSECQREEIQASGVNGGSNYDSLKVAKCLV 561
+E RE+ G NG S Y + K + ++
Sbjct: 166 LTEAVREDRMPGGRNGNSIYSNYKQRRSII 195
>AF273835-1|AAG15183.1| 476|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 476
Score = 28.3 bits (60), Expect = 5.7
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Frame = +1
Query: 307 KVVSVSFRARSARFCTTAVQRSAQN---WHGQGESDCLIKTKHCDGPRGC*-RNVIS-AQ 471
K + + A + C +RS QN +H ++ C I ++ + + C R IS
Sbjct: 108 KSTGLHYGAATCEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQNRNRCQSCRFRKCISKGM 167
Query: 472 CSECQREEIQASGVNGGSNYDSLKVAKCLV 561
+E RE+ G NG S Y + K + ++
Sbjct: 168 LTEAVREDRMPGGRNGNSIYSNYKQRRSII 197
>AF273834-1|AAG15182.1| 475|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 475
Score = 28.3 bits (60), Expect = 5.7
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Frame = +1
Query: 307 KVVSVSFRARSARFCTTAVQRSAQN---WHGQGESDCLIKTKHCDGPRGC*-RNVIS-AQ 471
K + + A + C +RS QN +H ++ C I ++ + + C R IS
Sbjct: 107 KSTGLHYGAATCEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQNRNRCQSCRFRKCISKGM 166
Query: 472 CSECQREEIQASGVNGGSNYDSLKVAKCLV 561
+E RE+ G NG S Y + K + ++
Sbjct: 167 LTEAVREDRMPGGRNGNSIYSNYKQRRSII 196
>AF273833-1|AAG15181.1| 475|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 475
Score = 28.3 bits (60), Expect = 5.7
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Frame = +1
Query: 307 KVVSVSFRARSARFCTTAVQRSAQN---WHGQGESDCLIKTKHCDGPRGC*-RNVIS-AQ 471
K + + A + C +RS QN +H ++ C I ++ + + C R IS
Sbjct: 107 KSTGLHYGAATCEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQNRNRCQSCRFRKCISKGM 166
Query: 472 CSECQREEIQASGVNGGSNYDSLKVAKCLV 561
+E RE+ G NG S Y + K + ++
Sbjct: 167 LTEAVREDRMPGGRNGNSIYSNYKQRRSII 196
>Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical
protein K08E7.7 protein.
Length = 729
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 362 TAVVQNRADRARNETDTTLRLGRSAEGRRTRVRIQSKRKTIFASVILN 219
TA+ + ADR + T+ R E + VRI RK++ ++++N
Sbjct: 638 TAIKKATADRETDAVQNTVESDRKYEIKACIVRIMKTRKSLTHTLLIN 685
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,284,969
Number of Sequences: 27780
Number of extensions: 348445
Number of successful extensions: 1006
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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