Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1401
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    31   0.99 
At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    30   1.3  
At1g76965.1 68414.m08961 glycine-rich protein                          29   2.3  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    29   3.0  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    29   3.0  
At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 fam...    27   9.2  
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    27   9.2  

>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 236 RKSSYVWTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFNGQLRT 382
           R ++YV T SG       R++L+      R+  D HD +  PFNG   T
Sbjct: 176 RNNTYV-TQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHT 222


>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 265 RTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQN 381
           R+RVLRPS  + + + +S  FR  S     T   R A N
Sbjct: 37  RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 141 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 46
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -2

Query: 207 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 31
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -2

Query: 207 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 31
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 784

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 193 IMRPQKLYIFNMTLAKIVLRLDWIRTRVLRPSADLPSRKVVSVSFRA 333
           ++R + +Y F+M L  +VLRL W++T VL  S +    +V  +   A
Sbjct: 698 MLRQKSIYYFSMVL-NLVLRLAWLQT-VLHSSFEHVDYRVTGLFLAA 742


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 543 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKK 674
           G  +P + +SD +  INE+   P   +AK   +E   +   GK+
Sbjct: 70  GGGLPNNGVSDTNSQINEVTVTP-QVIAKETVKENGLQKNGGKR 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,643,561
Number of Sequences: 28952
Number of extensions: 332794
Number of successful extensions: 848
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)