Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1400
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   2.9  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   2.9  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   3.8  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    26   5.1  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    26   6.7  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   8.9  
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    25   8.9  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 455 PSSLKTSVRRGNPKWPEDPPRGPGRVFFSA*AFEFHGIL 571
           P S  T       K P DPP+G  R FF+     F  +L
Sbjct: 3   PVSKNTRTSSKTVKKPYDPPQGSSRPFFTVLKRAFSSVL 41


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 703 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 575
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 23/80 (28%), Positives = 37/80 (46%)
 Frame = -2

Query: 739 LSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISLL*DSM 560
           LST  S+P +PA+        +S   P L+    +     + +C     P++IS    S 
Sbjct: 349 LSTTQSTPVKPASLQSEEDIQLSFKQPELSASSAELDEKLKSQCNVSPSPSNISDAPPS- 407

Query: 559 ELERSGRKENSSRTSRRVFR 500
           +L RS     +S +SR+V R
Sbjct: 408 KLNRSYSSPLASISSRKVVR 427


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 551 TLRQKRKLFPDLSAGLQATLGYPVEHSFLKTRERLLKRFRCR 426
           T+++K KL   ++  LQ+    P++ S +    R   R  CR
Sbjct: 311 TIQEKEKLIKTVNQYLQSNPSSPIQWSLISKNMRNRHRHHCR 352


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -1

Query: 659 SPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAGLQATLGYPV 480
           SPE  ++++  R P     ++ S    PS+ F    TL   R   P LS   Q T   P+
Sbjct: 166 SPESKQTSDGHRPPSPTSITTTSTSIDPSVAFSSKSTLATTRTNAP-LSRPSQPTKASPL 224


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 758 FPYLHYSID*RLFTLETCCGYGYEPARHL 672
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 477 TLVFKDEGTIIETVPLPGSGIGTGFPFAQRALFFIIF 367
           T+V  D G+    + + G  +GTGF F   A   I+F
Sbjct: 139 TMVIPDYGS--NEIYIDGMSVGTGFSFVWSACVAILF 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,206
Number of Sequences: 5004
Number of extensions: 68176
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)