Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1400
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0377 + 2728892-2729187,2729483-2729544,2730516-2730570,273...    32   0.57 
09_01_0025 - 441528-444284                                             29   5.3  
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414     28   7.0  
03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946           28   7.0  
08_02_0037 + 11480213-11481013,11483612-11483707                       28   9.3  
05_07_0006 - 27001038-27001600,27001713-27001980                       28   9.3  
03_06_0704 + 35641774-35642031,35642122-35642446,35642546-356426...    28   9.3  
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853     28   9.3  

>02_01_0377 +
           2728892-2729187,2729483-2729544,2730516-2730570,
           2730784-2730858,2730980-2731054,2731155-2731202,
           2731548-2732357,2732450-2732498,2733157-2733266,
           2733381-2733488,2733920-2733980
          Length = 582

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 407 PVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDPPRGP 523
           PV IP PG+G +   VP+  +  ++   P  P  PPR P
Sbjct: 518 PVLIPVPGAGPLGPFVPAPPEVVMQMMRPVMPMYPPRPP 556


>09_01_0025 - 441528-444284
          Length = 918

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -1

Query: 230 LPPRSAPTEAPSGSRPDPSALSVA 159
           +P R +PT+ P+GS P PS+++++
Sbjct: 13  IPLRCSPTQPPAGSDPIPSSMNLS 36


>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
          Length = 520

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 748 YIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSG 623
           + +L+ RG  P +PAA     RRD   ++P  + Q P    G
Sbjct: 28  HAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69


>03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946
          Length = 447

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 401 GNPVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDPPRGPG 526
           G P P  E G+G  S    +   T    G+P+    PP GPG
Sbjct: 9   GPPPPAGEKGAGAASTSARTPTPTPSTAGDPR-RHPPPPGPG 49


>08_02_0037 + 11480213-11481013,11483612-11483707
          Length = 298

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 287 VHAKPFSTSVLRASLEYLLLPPRSAPTEAPSGSRPDPSALSVAHVLLVTA 138
           V A+P   + +  S  Y +    SAP+ A    RP P  +  AHV  V A
Sbjct: 138 VKAEPTPAARMPESPPYYVAAAGSAPSTAGGDRRPRPRPVERAHVKTVLA 187


>05_07_0006 - 27001038-27001600,27001713-27001980
          Length = 276

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 282 RETLLHVSPQGLAGVFATTTKICTDGGSK 196
           R T+  V    L  +F TTTK+ T GG+K
Sbjct: 168 RRTVCPVPDSALRRIFHTTTKVITLGGAK 196


>03_06_0704 +
           35641774-35642031,35642122-35642446,35642546-35642699,
           35643662-35643706,35644121-35644180,35644532-35644694,
           35645356-35645717,35645985-35646303
          Length = 561

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +2

Query: 395 AKGNPVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDPPR 517
           A   P P PEP  G      PSS   SV    P+  E  P+
Sbjct: 151 ANNRPPPRPEPMPGLKKTAAPSSSSASVPPERPRALEKKPK 191


>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
          Length = 625

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -1

Query: 701 GYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLPSI 570
           G+   P+ H    P P+      S  R PP  R S RSE   P +
Sbjct: 26  GFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFPPL 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,362,218
Number of Sequences: 37544
Number of extensions: 538214
Number of successful extensions: 1912
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1909
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)