Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1400
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    26   0.33 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.77 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   9.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.5  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -3

Query: 282 RETLLHVSPQGLAGVFATTTKICTD---GGSKRLTPRPFCALRRA 157
           R  L    P+   G+ AT T I  D   GGS +LTP P  A  +A
Sbjct: 76  RNKLFVTVPRWRNGIPATLTYISLDTNRGGSPKLTPYPNWAQNKA 120


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 593 SEPYLPSIGFHGTRTLRQKRKLFPDLSAGLQATL 492
           SE   P+   HG R  RQ+ +   D  +G  + L
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKSGRMSIL 505


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 80  AYTLPLPARVMLNF 121
           ++ +PLP RV+ NF
Sbjct: 222 SFCIPLPVRVLPNF 235


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -1

Query: 473 SFLKTRERLLKRFRCRVPE*E--PDSLSL 393
           S LKT ++L  +  C VPE    P S+SL
Sbjct: 107 SLLKTADQLKIKGLCEVPESRDGPPSVSL 135


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 185 GVSRLEPPSVQILVVVANTPA 247
           GVS++ P S+  LV    +PA
Sbjct: 385 GVSQVSPVSMSALVSAVRSPA 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,830
Number of Sequences: 438
Number of extensions: 5695
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)