Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1400
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    32   0.48 
At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid t...    30   1.9  
At4g34480.1 68417.m04902 glycosyl hydrolase family 17 protein si...    29   4.4  
At2g19150.1 68415.m02235 pectinesterase family protein contains ...    29   4.4  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   5.9  
At1g07220.1 68414.m00768 expressed protein                             28   5.9  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    28   7.7  

>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 94   VTGTCDAKFLIW-YH*AVTSRTCATESAEGSG 186
            VTG+ D+  L+W  H A TSRT  +E + GSG
Sbjct: 2684 VTGSRDSTVLLWRIHKAFTSRTSVSEPSTGSG 2715


>At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to pEARLI
           1 (Accession No. L43080): an Arabidopsis member of a
           conserved gene family (PGF95-099), Plant Physiol. 109
           (4), 1497 (1995); contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234
          Length = 177

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 407 PVP-IPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDPPRGPG 526
           P P IP P   T S+  PS    SV   NP  P  PPR PG
Sbjct: 50  PSPSIPSPSVPTPSVPTPSVPTPSVPSPNPT-PVTPPRTPG 89


>At4g34480.1 68417.m04902 glycosyl hydrolase family 17 protein
           similar to glucan endo-1,3-beta-glucosidase precursor
           SP:P52409 from [Triticum aestivum]
          Length = 356

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
 Frame = +1

Query: 73  AFCLYTTVTGTCDAKFLIWYH*AVTSRTCATESA-EGSGREPLGASVGADLGGSSKYSSE 249
           AFCL+    G  D+K  I Y     ++  A  SA +  G E +   V A+ G +S+  + 
Sbjct: 216 AFCLFEPNAGRVDSKTGIKYTNMFDAQVDAVHSALKSMGFEKVEIVV-AETGWASRGDAN 274

Query: 250 ALRTDVE--KGFA*TVVA--RESVDPKLKERSYVDVACFFIIFKNNEK*RPLSERESGSY 417
            +   V+  K +   ++A  R  V   L     VD    F ++  N K  P SER  G +
Sbjct: 275 EVGASVDNAKAYNGNLIAHLRSMVGTPLMPGKPVD-TYIFALYDENLKPGPSSERAFGLF 333


>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 610 ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 711
           I GG+  +    ++  EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 635 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 537
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At1g07220.1 68414.m00768 expressed protein
          Length = 507

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 749 LHYSID*RLFTLETCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPY 582
           L Y +D  +   +T  G+  EP    H+ P   FS + +  +    ++CS  S PY
Sbjct: 37  LFYKVDDFIAQTKTLAGHNLEPTPW-HIFPRKSFSAATKHSQAYRILQCSYFSCPY 91


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 640 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSR 512
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNR 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,157,295
Number of Sequences: 28952
Number of extensions: 390188
Number of successful extensions: 1220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)