Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1399
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 30 0.34
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 29 0.59
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.77
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 27 2.4
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 27 3.1
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.5
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 25 7.2
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 25 7.2
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 9.5
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 9.5
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 29.9 bits (64), Expect = 0.34
Identities = 23/90 (25%), Positives = 42/90 (46%)
Frame = -1
Query: 655 SSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRRFSECHIKYIQFLR 476
SS+++ E S + +KP+R TA K + + ++ GP+ R + F+ + F +
Sbjct: 335 SSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSFAGEQPGDLSFQK 394
Query: 475 PHYIKILTR*NEHNARTSTRPGTGRIRFPS 386
I I+ R H+ + R G FP+
Sbjct: 395 GDIIDIVERSGSHDDWWTGRIGYREGIFPA 424
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 29.1 bits (62), Expect = 0.59
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 394 SGCGRCRVWSMFVRYVRFSE 453
+GCG+ VW +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 28.7 bits (61), Expect = 0.77
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Frame = -1
Query: 556 PENAGPDPVRNVRRFSECHIKYIQFLRPHYIKI--------LTR*NEHNARTS-TRPGTG 404
P + PDPV + S H+ PH+ + T + HNA +S T P +G
Sbjct: 158 PISTLPDPVATISSSSSSHLDMGAIHPPHHSSLPPHMGVDPSTMADAHNAHSSLTPPQSG 217
Query: 403 RIRFPSKPDTPRSSEPILIPKLR 335
+ S P P +P IP R
Sbjct: 218 ---YSSMPSLPYLQQPFQIPSQR 237
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 577 ARKIRGRPENAGPDPVRNVRRFSE 506
AR I GRPEN G ++N+ R S+
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSK 237
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -1
Query: 256 GTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 137
GT++ +IST +P P++VSGH A R+P+ S+
Sbjct: 374 GTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -3
Query: 173 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 36
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 431 TNIDQTRHRPHPLPVQTRHAPV 366
+N+D + PHP P Q PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/49 (30%), Positives = 18/49 (36%)
Frame = -3
Query: 272 DLLRIWYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGF 126
D+ R Y LH P P F SI + + CS S P F
Sbjct: 83 DVCRDCYAKQAFLHPCPKPHFVLVRSSIPSVASLTCSVNSMSVSPQSNF 131
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 32 RVFDGVTQSGLKTPPRGPGRV 94
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 32 RVFDGVTQSGLKTPPRGPGRV 94
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,690
Number of Sequences: 5004
Number of extensions: 59300
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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