Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1398
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   1.3  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   3.9  
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   5.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   9.0  

>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 29  KIESQNKMHKDH*ISVNKHKKKPTRL 106
           K +   + +KD+  S +KHKK+P RL
Sbjct: 292 KAQDTGESNKDNNTSTSKHKKRPKRL 317


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +2

Query: 119 LRQICDHYKYKDLFKQKYY*TF-ENREHK---GNRFMQKKLHINLTSYCCK 259
           L+    H  Y  + ++KY+ ++ ENR       N+F++K++  +   YC K
Sbjct: 257 LKSFTTHPIYSFIQERKYFLSYVENRYQSLDCWNKFLEKEIDPSFIKYCTK 307


>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 459 KCVRYRYMVKNRVERVGCNCSSTRRNEVTDIVL 361
           KC  Y+++++NR   + CN  +     + D V+
Sbjct: 108 KCCAYQFILRNRFLLIWCNSETIHLTYLIDTVV 140


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 464 PKNVFVIDIW*KTGSNVSGVTVAVL 390
           P + FVI +W KT SN+  +T++ L
Sbjct: 298 PVSWFVIQLWNKTISNLQLITLSSL 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,688
Number of Sequences: 5004
Number of extensions: 42860
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)