Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1398
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0281 + 22014394-22015534,22016041-22017056                       30   0.97 
04_04_1683 + 35345506-35345581,35346171-35346343,35346706-353467...    29   3.0  
11_01_0478 - 3691581-3691616,3691693-3691842,3691915-3692955,369...    28   3.9  
01_03_0085 + 12310675-12311354,12311475-12311579,12311755-123118...    28   5.2  

>09_06_0281 + 22014394-22015534,22016041-22017056
          Length = 718

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 432 KNRVERVGCNCSSTRRNEVTDIVLGCTQF 346
           +NR+   GCN  +T   E T+I+ GC+ F
Sbjct: 130 RNRLVVTGCNVQATLAGENTNIIGGCSSF 158


>04_04_1683 +
           35345506-35345581,35346171-35346343,35346706-35346739,
           35346919-35347055,35347356-35347422,35347645-35347744,
           35348375-35348538,35349023-35349069,35349177-35349224,
           35349463-35349976,35350190-35350278,35350472-35350549,
           35350972-35351019
          Length = 524

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 200 KGNRFMQKKLHINLTS-YCCKSYFWLN*FSIF*NRTKQFKPVRQFNLFVTNCV 355
           KGN FM+ K H+     Y C      N    + NR   +  +  FN  V +C+
Sbjct: 162 KGNEFMRSKQHLKAVELYTCAIALSRNNAIYYCNRAAAYTLLNMFNEAVEDCL 214


>11_01_0478 -
           3691581-3691616,3691693-3691842,3691915-3692955,
           3693007-3693459
          Length = 559

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 488 LGSTKCS*PKNVFVIDIW*KTGSNVSGVTVAVLDAMRL 375
           LG+T C+  +N FVI  W    +++  V  A++DA  L
Sbjct: 350 LGATTCNNARNAFVISSWTLKMNDMRWVMDAMVDATEL 387


>01_03_0085 +
           12310675-12311354,12311475-12311579,12311755-12311877,
           12312206-12312376,12312472-12312601,12313003-12313058,
           12313602-12313704,12313705-12313914,12314122-12314253
          Length = 569

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 361 GVHTICHKQIKLTHWLKLFRAILEN*KLIKPKV 263
           G   +CH Q+ L  WLK+  A   + +++ P +
Sbjct: 448 GHFDLCHMQVNLVDWLKMMVASRRSEEVVDPTI 480


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,278,591
Number of Sequences: 37544
Number of extensions: 223429
Number of successful extensions: 382
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)