Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1398
         (520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18511| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)                     28   5.3  
SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_18511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 146 IYNGHISVSNITEVVVLVFFCVY*QIFSGLYAFY 45
           IY GH ++  +  V+ L  F     +F+GL+  Y
Sbjct: 78  IYRGHYNIKEVRHVIALFVFVTITWLFAGLHLAY 111


>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 629

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
 Frame = +2

Query: 209 RFMQKKLHINLTSYCC-------KSYFWLN*FSIF*NRTKQF 313
           RF+ KKL   +  YCC        +Y+W N  S F NR  ++
Sbjct: 560 RFVIKKLTKMIRKYCCMHCNARIAAYYWSNLSSAFRNRVSEY 601


>SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 194 EHKGNRFMQKKLHINLTSYCCKSYFWLN 277
           EH    +M+  L ++   YC +S  WLN
Sbjct: 62  EHNAEHWMEVVLQMDNMEYCSESVCWLN 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,588,248
Number of Sequences: 59808
Number of extensions: 310962
Number of successful extensions: 615
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)