Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1398
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025463-4|AAB71010.2|  344|Caenorhabditis elegans Serpentine re...    29   1.5  
Z81485-3|CAB03977.1|  258|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AF025463-4|AAB71010.2|  344|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 3 protein.
          Length = 344

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = -2

Query: 240 RLMCSFFCIN-RFPLCSLFSKV**YFCLNKSLYL*WSHICLKHNRSSRVGFFLCLLTDIQ 64
           +L+ S+  ++  F LC LFS +     L K ++  WS   + H    ++  + C    + 
Sbjct: 47  KLLQSYSMLHLNFALCDLFSCLAGMLALQKIVFSGWSLTYIFHGACGQISSYFCYFLHVF 106

Query: 63  WSLCILFCDSILM 25
              C+     ILM
Sbjct: 107 VCHCLAHSQWILM 119


>Z81485-3|CAB03977.1|  258|Caenorhabditis elegans Hypothetical
           protein C49F5.3 protein.
          Length = 258

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 453 HIFRLRAFCTPQAFCLSLI 509
           + ++L+ FC  Q FC SLI
Sbjct: 32  YFYKLKTFCDEQLFCFSLI 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,811,518
Number of Sequences: 27780
Number of extensions: 243165
Number of successful extensions: 563
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)