Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1398
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   3.3  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   4.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.3  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   5.7  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   5.7  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 201 RETDLCKKNYTSI*LHIVVRVTFGLINFQF 290
           +E  L  K+ T++   IV  +TFGL+  QF
Sbjct: 228 QEATLVYKDGTNVMGMIVFCITFGLVAGQF 257


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 338 FVTNCVHPKTISV 376
           F  NC+HP   SV
Sbjct: 34  FCRNCIHPTVFSV 46


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 338 FVTNCVHPKTISV 376
           F  NC+HP   SV
Sbjct: 482 FCRNCIHPTVFSV 494


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 129 ICLKHNRSSRVGFFLC 82
           + L+H +  R GF+LC
Sbjct: 771 LLLQHVKEDREGFYLC 786


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 129 ICLKHNRSSRVGFFLC 82
           + L+H +  R GF+LC
Sbjct: 767 LLLQHVKEDREGFYLC 782


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 9   LRNDYPLK*SHKIKCIKTTEYLL 77
           L+ +YPL    K+K I+  +++L
Sbjct: 37  LKKEYPLVMDTKLKIIEILQFIL 59


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
          1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 9  LRNDYPLK*SHKIKCIKTTEYLL 77
          L+ +YPL    K+K I+  +++L
Sbjct: 5  LKKEYPLVMDTKLKIIEILQFIL 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,118
Number of Sequences: 438
Number of extensions: 2831
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)