Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1398
         (520 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit...    29   2.5  
At1g05060.1 68414.m00507 expressed protein                             27   7.6  

>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 565

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 155 NLYIYNGHISVSNITEVVVLVFFCVY*QIFSGL 57
           NL+I NGH  +   T++ + VF C+  ++F  L
Sbjct: 526 NLFITNGHYFLKEKTDLFLSVFSCLVFEMFCSL 558


>At1g05060.1 68414.m00507 expressed protein
          Length = 253

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +1

Query: 388 SSTATVTPDTFDPVFYHISITNTFFG*EHFVLPKHSA*VLSN 513
           ++T +++PD  +P+  ++S+    FG   + LP+    VL++
Sbjct: 89  NATVSISPDVLNPLRGYVSLPQVTFGRRRWDLPESENSVLAS 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,661,180
Number of Sequences: 28952
Number of extensions: 206455
Number of successful extensions: 365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)