Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1397
         (566 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    25   0.34 
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   1.4  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   1.4  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.4  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   3.2  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    21   7.3  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   9.7  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 223 WINEIPTVPIYI 258
           W+NEIPT+P+ I
Sbjct: 321 WLNEIPTMPVSI 332


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 551 SRGSFKRRRAFRPRPTLHAWNETPCARRYYRPRTASAQPSK 429
           SRG   + R+ R +P     ++T     YYRPRT+  +P +
Sbjct: 206 SRGRHNQSRSKR-QPKTGREDQTR-RNPYYRPRTSRTEPPR 244


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 360 PLMSPYNARLESSSTGSS--FPADSPKPVPLAVVSLDIDR 247
           PL+ P   R  S+++ +S   P+ SP+P  +  +SL + R
Sbjct: 197 PLLVPIPQRTASTASSASNYSPSQSPEPESVRPLSLVVRR 236


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 392 SSLKNHYFHCFITYSVGRK 448
           SS    +FHC+     GRK
Sbjct: 416 SSFFQQFFHCYCPIKFGRK 434


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 554 GSRGSFKRRRAFRPRPTLHAWNETPCARRYYRP 456
           G+ G  +RR     R  L A+  T     +Y+P
Sbjct: 170 GTTGKLRRRSTAASRSRLAAFKRTIALGAFYQP 202


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 196 RHLISDAHEWINEI 237
           RHLI    +W NE+
Sbjct: 91  RHLIDHKRDWWNEL 104


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 230 TRFPLSLSISSETTAKGTGLGESAGKEDPVELDSSLA 340
           T+ PL+L +      K     +S+ +  PV+ D SL+
Sbjct: 205 TQLPLNLGLDFPYQGKFEVPTKSSPRSSPVQSDVSLS 241


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,566
Number of Sequences: 336
Number of extensions: 2520
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)