Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1397
(566 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35) 59 2e-09
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 6e-07
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5) 47 1e-05
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_36343| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4) 29 3.5
SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37) 28 6.1
SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 28 6.1
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 28 6.1
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30) 28 6.1
SB_53612| Best HMM Match : SRCR (HMM E-Value=0) 28 6.1
SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76) 28 6.1
SB_39271| Best HMM Match : Secretin_N (HMM E-Value=2.4) 28 6.1
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_31551| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37) 28 6.1
SB_27585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 28 6.1
SB_14634| Best HMM Match : ATP-synt_E (HMM E-Value=2.6) 28 6.1
SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_9508| Best HMM Match : Secretin_N (HMM E-Value=1.8) 28 6.1
>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/41 (80%), Positives = 36/41 (87%)
Frame = -3
Query: 378 SPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 256
+PTY+TPLMS + RLESSSTGSSFPAD KPVPLAVVSLD
Sbjct: 88 TPTYSTPLMSFHRVRLESSSTGSSFPADCAKPVPLAVVSLD 128
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -2
Query: 448 LPPNRVSNETMKVVVFQRR 392
LP +R+S +T++VVVF RR
Sbjct: 67 LPLHRISKKTIRVVVFHRR 85
>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
Length = 521
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = -1
Query: 119 HSEHWAEITLRQHPRGPSQXFVLIRQSDSPCPCQF 15
++EHWAEITLRQH PSQ FVLI+QSDSP CQF
Sbjct: 48 NNEHWAEITLRQHRFRPSQCFVLIKQSDSPSHCQF 82
>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +1
Query: 190 MPRHLISDAHEWINEIPTVPI 252
MPRHLISDAHEWINEIPTVPI
Sbjct: 1 MPRHLISDAHEWINEIPTVPI 21
>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
Length = 167
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +2
Query: 107 SALNVNVKKFKQARVNGGSNYDSL 178
+ALNV VKKF QARVNGGSNYDSL
Sbjct: 28 AALNVKVKKFNQARVNGGSNYDSL 51
>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +2
Query: 110 ALNVNVKKFKQARVNGGSNYDSL 178
ALNV VKKF QARVNG SNYDSL
Sbjct: 2 ALNVKVKKFNQARVNGWSNYDSL 24
>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +2
Query: 104 PSALNVNVKKFKQARVNGGSNYDS 175
PSALNV VKKF QARVNGG +S
Sbjct: 31 PSALNVKVKKFNQARVNGGDPLES 54
>SB_36343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -3
Query: 381 RSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDID 250
R PT P + Y +S TG +F AD P+ VP+ VS I+
Sbjct: 117 RRPTDDPPPLPDYVMVRFTSYTGPAFIADDPQVVPIVPVSRSIE 160
>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
Length = 801
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 563 PRTGSRGSF-KRRRAFRPRPTLHAWNETPCARRYYRPRTASAQPS 432
P+ GS+ S KRRR P + ET C+RR + A+P+
Sbjct: 65 PKLGSKLSVGKRRRQAESPPRTQTFAETLCSRRAFHVHKKLAKPN 109
>SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
Length = 732
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 367 ISGRSFRAIVAEKPLLSLFH 426
+ GR F I KPLLSLFH
Sbjct: 374 VFGRDFDIITDHKPLLSLFH 393
>SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 638
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 493 GTKHRAPADIIDRAPLPPNRV 431
GT HR PA+ R +P NRV
Sbjct: 519 GTHHRVPAEATGRVDVPDNRV 539
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -2
Query: 475 PADIIDRAPLPPNRVSNETMKVVVFQRRSRETI 377
PA + +++PLP N ++E +++ QRR E +
Sbjct: 2409 PAKLPNQSPLPNNASASEIQRILENQRREEELL 2441
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 367 ISGRSFRAIVAEKPLLSLFH 426
+ GR F I KPLLSLFH
Sbjct: 1317 VFGRDFDIITDHKPLLSLFH 1336
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 367 ISGRSFRAIVAEKPLLSLFH 426
+ GR F I KPLLSLFH
Sbjct: 79 VFGRDFDIITDHKPLLSLFH 98
>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 1280
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 367 ISGRSFRAIVAEKPLLSLFH 426
+ GR F I KPLLSLFH
Sbjct: 608 VFGRDFDIITDHKPLLSLFH 627
>SB_53612| Best HMM Match : SRCR (HMM E-Value=0)
Length = 409
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 387 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 277
A + T ATP SP R +++ SS SP P P
Sbjct: 366 ASSASTPATPDSSPKRKRTRQANSASSSQPSSPHPAP 402
>SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76)
Length = 250
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 493 GTKHRAPADIIDRAPLPPNRV 431
GT HR PA+ R +P NRV
Sbjct: 225 GTHHRVPAEATGRVDVPDNRV 245
>SB_39271| Best HMM Match : Secretin_N (HMM E-Value=2.4)
Length = 300
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 367 ISGRSFRAIVAEKPLLSLFH 426
+ GR F I KPLLSLFH
Sbjct: 259 VFGRDFDIITDHKPLLSLFH 278
>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1089
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 367 ISGRSFRAIVAEKPLLSLFH 426
+ GR F I KPLLSLFH
Sbjct: 568 VFGRDFDIITDHKPLLSLFH 587
>SB_31551| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
Length = 429
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 367 ISGRSFRAIVAEKPLLSLFH 426
+ GR F I KPLLSLFH
Sbjct: 347 VFGRDFDIITDHKPLLSLFH 366
>SB_27585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 367 ISGRSFRAIVAEKPLLSLFH 426
+ GR F I KPLLSLFH
Sbjct: 167 VFGRDFDIITDHKPLLSLFH 186
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 367 ISGRSFRAIVAEKPLLSLFH 426
+ GR F I KPLLSLFH
Sbjct: 773 VFGRDFDIITDHKPLLSLFH 792
>SB_14634| Best HMM Match : ATP-synt_E (HMM E-Value=2.6)
Length = 309
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 367 ISGRSFRAIVAEKPLLSLFH 426
+ GR F I KPLLSLFH
Sbjct: 167 VFGRDFDIITDHKPLLSLFH 186
>SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 367 ISGRSFRAIVAEKPLLSLFH 426
+ GR F I KPLLSLFH
Sbjct: 608 VFGRDFDIITDHKPLLSLFH 627
>SB_9508| Best HMM Match : Secretin_N (HMM E-Value=1.8)
Length = 391
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 367 ISGRSFRAIVAEKPLLSLFH 426
+ GR F I KPLLSLFH
Sbjct: 241 VFGRDFDIITDHKPLLSLFH 260
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,595,556
Number of Sequences: 59808
Number of extensions: 358619
Number of successful extensions: 859
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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