Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1397
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 30 1.0
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 30 1.0
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z82090-4|CAB05008.2| 543|Caenorhabditis elegans Hypothetical pr... 28 4.1
AF078788-1|AAC26965.2| 629|Caenorhabditis elegans Hypothetical ... 28 4.1
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 28 5.4
U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z32679-2|CAA83592.1| 385|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 19 WHGQGESDCLIKTKXCDGPRGC*RNVISAQCSECQREEIQASAG 150
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 19 WHGQGESDCLIKTKXCDGPRGC*RNVISAQCSECQREEIQASAG 150
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 402 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 283
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 402 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 283
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>Z82090-4|CAB05008.2| 543|Caenorhabditis elegans Hypothetical
protein ZK337.2 protein.
Length = 543
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/63 (36%), Positives = 30/63 (47%)
Frame = -3
Query: 393 DRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDIDRDSGNLVNPFMR 214
D A+ SP YAT + +AR SST SSF + S+D D L++PF
Sbjct: 84 DHARLSPNYATSDLGS-SARSSFSSTTSSFLTYRDR-------SVDFDEAGKELISPFDC 135
Query: 213 VTN 205
TN
Sbjct: 136 DTN 138
>AF078788-1|AAC26965.2| 629|Caenorhabditis elegans Hypothetical
protein ZC190.4 protein.
Length = 629
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = -2
Query: 496 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 362
+GT+ + DIID +P N +S++ + +++ R ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -3
Query: 399 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 283
+DD R P + + L PY + SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724
>U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical
protein B0432.7 protein.
Length = 621
Score = 27.5 bits (58), Expect = 7.1
Identities = 26/77 (33%), Positives = 38/77 (49%)
Frame = +2
Query: 257 SSETTAKGTGLGESAGKEDPVELDSSLAL*GDMRGVA*VGDRFARSSLKNHYFHCFITYS 436
S TT+ + +S+ ++ LD AL G +R VA + DR R SLKN F+TY+
Sbjct: 34 SLATTSAARYVSDSSA-DNTTRLDE--ALNGMIRYVADM-DRATRLSLKNQQLKEFLTYT 89
Query: 437 VGRKRCAVDNIGGRTVF 487
+ NI R+ F
Sbjct: 90 PVILNASTTNIVTRSKF 106
>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical protein
W02B8.2 protein.
Length = 1256
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 562 LEPDHAGVLNGDERFGHVPLCTLGTKHRAPADIIDRAPLPPNR 434
+E AG + + F +VPL H++P+D+ R +PP R
Sbjct: 1084 IESTPAGFIFASDTFYYVPL-----DHQSPSDVSARKLMPPRR 1121
>Z32679-2|CAA83592.1| 385|Caenorhabditis elegans Hypothetical
protein C05B5.2 protein.
Length = 385
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 405 FFSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPK 286
F+S+ A RS + P+MS + +++T + PA S K
Sbjct: 46 FYSNITAPRSTSVLAPVMSSLEVYINTTTTSAFAPAQSIK 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,536,122
Number of Sequences: 27780
Number of extensions: 252044
Number of successful extensions: 776
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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