Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1397
(566 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 0.54
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot... 31 0.71
At1g60630.1 68414.m06825 leucine-rich repeat family protein simi... 31 0.71
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 30 1.2
At1g21380.1 68414.m02675 VHS domain-containing protein / GAT dom... 29 1.6
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 28 3.8
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 28 3.8
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 5.0
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 27 6.6
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 27 6.6
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 27 6.6
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 27 6.6
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 6.6
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 27 6.6
At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family p... 27 8.7
At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family p... 27 8.7
At1g78240.1 68414.m09118 dehydration-responsive protein-related ... 27 8.7
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.1 bits (67), Expect = 0.54
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 496 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 350
LG +H PA +I+R P PP +S +++++F E +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277
>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
similar to SP|P22418 Fructose-1,6-bisphosphatase,
chloroplast precursor (EC 3.1.3.11)
(D-fructose-1,6-bisphosphate 1-phosphohydrolase)
(FBPase) {Spinacia oleracea}; contains Pfam profile
PF00316: fructose-1,6-bisphosphatase
Length = 404
Score = 30.7 bits (66), Expect = 0.71
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 366 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDI 253
A+ + SP+N+ L S SS +D P PL +VS DI
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSNDI 142
>At1g60630.1 68414.m06825 leucine-rich repeat family protein similar
to receptor kinase GI:498278 from [Petunia
integrifolia]; contains protein kinase domain,
Pfam:PF00069; contains leucine-rich repeats,
Pfam:PF00560
Length = 652
Score = 30.7 bits (66), Expect = 0.71
Identities = 23/86 (26%), Positives = 37/86 (43%)
Frame = -3
Query: 333 LESSSTGSSFPADSPKPVPLAVVSLDIDRDSGNLVNPFMRVTN*MTRHLATLRES*LLPP 154
L ++ FP L V L +R SG + + +R++ T ++ S +PP
Sbjct: 116 LNDNNFSGEFPESLTSLHRLKTVVLSRNRFSGKIPSSLLRLSRLYTFYVQDNLFSGSIPP 175
Query: 153 FTRACLNFFTLTFRALGRNHIASTPA 76
+A L FF ++ L HI T A
Sbjct: 176 LNQATLRFFNVSNNQLS-GHIPPTQA 200
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 181 GSQMPRHLISDAHEWINEIPTVPIYI*RNHSQGNGLGRISGER 309
G +P + +SD + INE+ P I + + NGL + G+R
Sbjct: 70 GGGLPNNGVSDTNSQINEVTVTPQVIAKETVKENGLQKNGGKR 112
>At1g21380.1 68414.m02675 VHS domain-containing protein / GAT
domain-containing protein weak similarity to Hrs [Rattus
norvegicus] GI:8547026; contains Pfam profiles PF00790:
VHS domain, PF03127: GAT domain
Length = 506
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 330 ESSSTGSSFPADSPKPVPLAVVSLDIDRDSGN 235
+ + G+S PA +P P+PL ++ D D D +
Sbjct: 264 DDKAKGNSVPATAPTPIPLVSINHDDDDDESD 295
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 28.3 bits (60), Expect = 3.8
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = -2
Query: 169 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHR 65
++T V P ++ F+H I + ++ + V+ + GH+
Sbjct: 33 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQ 67
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 28.3 bits (60), Expect = 3.8
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = -2
Query: 169 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHR 65
++T V P ++ F+H I + ++ + V+ + GH+
Sbjct: 32 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQ 66
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 460 DRAPLPPNRVSNETMKVVVFQRRSRET 380
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 451 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 341
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 451 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 341
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -3
Query: 375 PTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDID 250
P P SP + R S GSS + SP P+P L I+
Sbjct: 40 PQPPEPPESPPDLRRPEKSIGSSSSSSSPSPIPSPKTPLKIN 81
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 378 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 271
SPT + + SP A ++ + +S P +SPK P P++
Sbjct: 41 SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 499 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 404
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 505 LCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 374
LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 56 LCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
>At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family
protein contains Pfam PF03208: PRA1 family protein
Length = 209
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 192 HLATLRES*LLPPFTRACLNFFTLTFRALGRNH 94
HLAT+ + L P +A N F FRA+ RN+
Sbjct: 174 HLATILHASLRTPNLKARFNTFREEFRAVWRNY 206
>At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family
protein contains Pfam PF03208: PRA1 family protein
Length = 209
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 192 HLATLRES*LLPPFTRACLNFFTLTFRALGRNH 94
HLAT+ + L P +A N F FRA+ RN+
Sbjct: 174 HLATILHASLRTPNLKARFNTFREEFRAVWRNY 206
>At1g78240.1 68414.m09118 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 684
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 212 TRMNGLT-RFPLSLSISSETTAKGTGLGESAGKEDP 316
T N LT RFP S+++++K G GE+ DP
Sbjct: 36 TENNNLTLRFPFGFLFSNQSSSKHGGGGENGFSADP 71
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,033,928
Number of Sequences: 28952
Number of extensions: 242777
Number of successful extensions: 644
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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