Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1396
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287...    37   0.016
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.1  
07_03_0846 - 21983581-21986055                                         29   2.5  
03_05_0183 - 21681673-21682524                                         29   3.3  
05_05_0183 - 23051159-23051295,23051705-23051809,23051904-230519...    28   5.8  
07_03_0414 + 17892133-17893590                                         28   7.6  

>09_04_0593 -
           18825741-18826702,18826994-18827875,18828687-18828775,
           18828942-18829080,18829405-18829531,18829629-18829838
          Length = 802

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
 Frame = -1

Query: 285 VREEPQFRTFVHALGRAAGGAKLP-SAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 109
           +++EP+FR F  +  R  G A  P +AG+  N + A +++++S K  +  E   SG    
Sbjct: 691 IKDEPEFRAFTGSGNRLDGKASKPLAAGISSNPAAASSAISDSNK-KVNQETAASG---- 745

Query: 108 CDFTSRVSHSKRETRRRSPFGSRRSMLS 25
                 VS+S R+ + +  FGS +S  S
Sbjct: 746 ------VSNSTRQKKGKLVFGSNKSSSS 767


>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -1

Query: 177 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 43
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 35  DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 184
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 475 SQAFIATLLFDLSMSALPIIAKQNSPS 395
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>05_05_0183 -
           23051159-23051295,23051705-23051809,23051904-23051962,
           23052620-23052688,23052892-23053154,23053367-23053431,
           23053510-23053735,23053824-23053839,23054231-23054420,
           23055384-23055399
          Length = 381

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 386 QSNAWRILLRNDRKSRHRKIKKQRRYERLAA 478
           Q++ W++ L  D+ S   K+K+ +R +R+ A
Sbjct: 348 QADCWKVTLIGDKLSPREKLKENQRQQRVQA 378


>07_03_0414 + 17892133-17893590
          Length = 485

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +3

Query: 255 QMSETAVPLVLSSITIATTSHQ*GKTNLSHDGLIPAHVPF*WVNNPTL-GEFCFAMIGRA 431
           Q   + V + L S+T+ +       T   H GL+ A  PF WV  P + G    A +  A
Sbjct: 279 QADGSVVYVSLGSLTVISLEQF---TEFLH-GLVAAGYPFLWVLRPDMVGASQSAALREA 334

Query: 432 DIERSKSNVAMNAWLPQ 482
                KS   +  W PQ
Sbjct: 335 VAAAGKSKARVVEWAPQ 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,455,107
Number of Sequences: 37544
Number of extensions: 391364
Number of successful extensions: 1047
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)