Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1396
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01210.1 68417.m00159 glycosyltransferase family protein 1 co...    29   2.8  
At4g27120.2 68417.m03898 expressed protein                             29   3.6  
At4g27120.1 68417.m03897 expressed protein                             29   3.6  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.6  
At3g49040.1 68416.m05357 F-box family protein contains F-box dom...    28   6.4  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   8.4  

>At4g01210.1 68417.m00159 glycosyltransferase family protein 1
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 981

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 496 VVTFRHLLLKTLYTKGSIGRAFAVPMRTEHLDQASFCPFAPRE 624
           VV F + LL  LYT+   G  + +P   E + +A    F P++
Sbjct: 282 VVVFHNYLLPILYTEFDAGNFYVIPGSPEEVCKAKNLEFPPQK 324


>At4g27120.2 68417.m03898 expressed protein
          Length = 298

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = -1

Query: 285 VREEPQFRTFVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-Q 109
           V E PQ +   + + RA GG ++        AS + +++ E+G      +  E+GG++ +
Sbjct: 35  VAEPPQVQPREN-VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQAR 93

Query: 108 CDFTSRVSHSKRETRRRSPFGSRRS 34
                     +RE +R++   +R S
Sbjct: 94  ASKKKEKKRQEREAQRQAEEATRES 118


>At4g27120.1 68417.m03897 expressed protein
          Length = 298

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = -1

Query: 285 VREEPQFRTFVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-Q 109
           V E PQ +   + + RA GG ++        AS + +++ E+G      +  E+GG++ +
Sbjct: 35  VAEPPQVQPREN-VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQAR 93

Query: 108 CDFTSRVSHSKRETRRRSPFGSRRS 34
                     +RE +R++   +R S
Sbjct: 94  ASKKKEKKRQEREAQRQAEEATRES 118


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 609 RAKAGLIQMFSTHRDCESTAYRSFSIK 529
           RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 291 RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At3g49040.1 68416.m05357 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 415

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 581 SVRIGTAKARPIDPLV*RVFSKRCRKVTTGITGLWQPSVHSDVAF 447
           S++  T   +PI+P+  +VF KR R++   +  L + S  SD  F
Sbjct: 369 SLKKATFSTKPIEPVKLKVFKKR-REILNELASLGRASNPSDFVF 412


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 185 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 45
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,403,547
Number of Sequences: 28952
Number of extensions: 295687
Number of successful extensions: 741
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)