Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1390
         (383 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    24   0.60 
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    24   0.60 
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    23   1.4  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    23   1.4  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   4.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   5.6  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 23.8 bits (49), Expect = 0.60
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 254 RNTNILFFGLRIIYIDCTVYCSDLKEKTY 340
           + TNI+  GL ++Y+     C+  K   +
Sbjct: 350 KTTNIIILGLNVVYVVTAWICAITKRDMF 378


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 23.8 bits (49), Expect = 0.60
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 254 RNTNILFFGLRIIYIDCTVYCSDLKEKTY 340
           + TNI+  GL ++Y+     C+  K   +
Sbjct: 75  KTTNIIILGLNVVYVVTAWICAITKRDMF 103


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 242 SRFMRNTNILFFGLRIIYIDCTVY 313
           +  +RN ++ FF   I+YI  TV+
Sbjct: 129 TNLLRNVSVQFFVYVILYILATVF 152


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 242 SRFMRNTNILFFGLRIIYIDCTVY 313
           +  +RN ++ FF   I+YI  TV+
Sbjct: 129 TNLLRNVSVQFFVYVILYILATVF 152


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -1

Query: 176 SLRHKINLKTKTHFKDTSLYTIVILKFFKNSKLTITACHVF 54
           +L+H  NL+ K    + ++  I      KN   + T  H F
Sbjct: 381 NLKHHANLRQKNQKGEVTVLEIEDWVLLKNKVTSDTRTHQF 421


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 9   CLFNTISCKYFLQMCKYMAGSNCK 80
           CLF+   C+  LQ C  +  + C+
Sbjct: 552 CLFDGRDCEESLQPCNPIYDAYCQ 575


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,530
Number of Sequences: 336
Number of extensions: 1837
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8014124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)