Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1390
(383 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 27 0.76
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 25 3.1
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 25 4.1
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 4.1
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 25 5.4
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 24 7.1
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 24 7.1
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.4
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 24 9.4
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 24 9.4
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 9.4
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 27.5 bits (58), Expect = 0.76
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 129 VFKMSLGFQIDFVS*TKDCYYCISPSQMFHLDEIF*HSHDSCGTPTFYFS 278
+F +G Q + + + +S S FHL +HD+ GT F S
Sbjct: 594 IFVKKIGCQSELFNCENSDWTKVSSSTAFHLSNSLFETHDTTGTSNFAVS 643
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 3.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 144 DSF*RHIALHNCHFKVLQ 91
D F +H H+CHF +L+
Sbjct: 140 DIFMKHATKHSCHFNILK 157
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.0 bits (52), Expect = 4.1
Identities = 8/31 (25%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 291 IILNPKNRMLVFRMNRDYVKIFHPN-ETFDW 202
+++NP ++ +++R Y+++ HP+ DW
Sbjct: 68 LVINPYDKKVIWRRGLAYLRLGHPHLANRDW 98
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.0 bits (52), Expect = 4.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 137 FKDTSLYTIVILKFFKNSKLTITACHVF 54
F+D +YT+ ILK ++ T+ HV+
Sbjct: 83 FRDLGIYTMDILKSYQGKNRLETSPHVY 110
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 24.6 bits (51), Expect = 5.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 164 KINLKTKTHFKDTSLYTIVILKFFKNSKLTITAC 63
K LKT + +KD + I + N LT+TAC
Sbjct: 47 KSPLKTPSIYKDYRDFMINSYRLEPNEYLTVTAC 80
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 24.2 bits (50), Expect = 7.1
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = -1
Query: 173 LRHKINLKTKTHFKDTSLYTIVILKFFKNSKLTITACHVFTHL*KIFTTYC 21
++ K+N + ++ K TS+ ++ F +K + C V H+ I C
Sbjct: 439 IKGKLNTVSMSNCKRTSVVVDTLVAAFDIAKCSNFGCQVMNHVPMIVIDQC 489
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 24.2 bits (50), Expect = 7.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -1
Query: 278 RKIECWCSA*IVTMSKYFIQMKHLTGAYAIITVFSLRHKINLKTKTHF 135
RK++ C V + F A AI TVF + ++L T T F
Sbjct: 133 RKLKTTCILAYVALCSSFASSVFAVPAEAITTVFHISLTVSLLTMTVF 180
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 23.8 bits (49), Expect = 9.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 137 FKDTSLYTIVILKFFKNSKLTITACHVFTHL*KIFT 30
FK +YT +++ +SK IT V T L +FT
Sbjct: 245 FKIIRMYTSTQKEYYASSKQMITTFSVITLLLLLFT 280
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 23.8 bits (49), Expect = 9.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +1
Query: 217 IWMKYFDIVTIHAEHQHSIFRIE 285
IW Y ++ H EH + F E
Sbjct: 67 IWKSYLELRVAHVEHLNPYFHAE 89
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 23.8 bits (49), Expect = 9.4
Identities = 7/25 (28%), Positives = 16/25 (64%)
Frame = -3
Query: 288 ILNPKNRMLVFRMNRDYVKIFHPNE 214
IL + + V++ +++KI+H N+
Sbjct: 68 ILETRRELPVYQQREEFLKIYHENQ 92
>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 23.8 bits (49), Expect = 9.4
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +1
Query: 205 VKCFIWMKYFDIVTIHAEHQH 267
+K F W F+ + I+ +H H
Sbjct: 16 IKIFTWKANFESIRINLQHMH 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,454,091
Number of Sequences: 5004
Number of extensions: 27113
Number of successful extensions: 66
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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