Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1390
         (383 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0581 + 4310136-4310186,4310940-4311144,4311245-4311410,431...    28   2.2  
01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,530...    27   5.1  

>03_01_0581 +
           4310136-4310186,4310940-4311144,4311245-4311410,
           4312035-4312257,4312891-4312967,4313091-4313278,
           4313363-4313457,4313674-4313807,4313914-4314024,
           4314304-4314619,4314919-4315040,4315183-4315293,
           4315824-4316012,4316105-4316263,4316449-4316530,
           4317080-4317190
          Length = 779

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 206 TGAYAIITVFSLRHKINLKTKTHFKDTSLYTIVILKFFKNSKLTI 72
           TG     T+F     ++   + H K+T+    +I  FFK SKL++
Sbjct: 176 TGQVVYETMFVWNEFLSRAIRNHLKNTTWTVALIHGFFKQSKLSV 220


>01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,
            5309110-5309356,5309694-5309839,5312482-5312707,
            5313652-5313874,5314054-5314202,5315345-5315514,
            5316064-5316135,5317610-5317741,5317813-5317900,
            5319440-5319656,5320123-5320306,5320644-5320727,
            5321148-5321242,5321519-5321562,5321707-5322367,
            5323053-5323356
          Length = 1218

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 40   FYKCVNTWQAVIVSLEFLKNFKMT 111
            FY   N   AV+ SL+ L+NF+ T
Sbjct: 1190 FYTVKNEGNAVVCSLQLLRNFRFT 1213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,004,754
Number of Sequences: 37544
Number of extensions: 129781
Number of successful extensions: 228
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)