Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1390
         (383 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            27   0.31 
AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative transcri...    22   8.9  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -3

Query: 276 KNR-MLVFRM-NRDYVKIFHPNETFDWGLCNNN 184
           KNR +L++++ N+DY ++FH ++ F     N N
Sbjct: 38  KNRALLIYQLSNKDYTEVFHEDDFFSLTTPNAN 70


>AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative
           transcription factor protein.
          Length = 319

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -2

Query: 100 SSSKTLNLQLLPAMYLHICRKYLQLIVLNKHIH 2
           S +  L   +L   Y   C  YLQ  +   H+H
Sbjct: 127 SDANMLPTNILGVAYPSSCHNYLQPDLFAAHLH 159


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 363,194
Number of Sequences: 2352
Number of extensions: 6124
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 29501847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)