Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1390
(383 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 23 1.6
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 21 4.9
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 21 6.5
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 21 6.5
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 21 6.5
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 6.5
AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein. 21 6.5
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 21 6.5
AY545000-1|AAS50159.2| 126|Apis mellifera profilin protein. 21 6.5
AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta... 21 6.5
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 20 8.6
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 20 8.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 20 8.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 20 8.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 20 8.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 20 8.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 20 8.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 20 8.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 20 8.6
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 22.6 bits (46), Expect = 1.6
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 180 DCYYCIS 200
DCYYCIS
Sbjct: 322 DCYYCIS 328
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.0 bits (42), Expect = 4.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 338 KFSLSSHYNKQYNQY 294
K+S ++YN YN Y
Sbjct: 323 KYSNYNNYNNNYNNY 337
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 6.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 332 SLSSHYNKQYNQYK 291
SLS++YN N YK
Sbjct: 84 SLSNNYNYNNNNYK 97
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 6.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 332 SLSSHYNKQYNQYK 291
SLS++YN N YK
Sbjct: 84 SLSNNYNYNNNNYK 97
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 6.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 332 SLSSHYNKQYNQYK 291
SLS++YN N YK
Sbjct: 84 SLSNNYNYNNNNYK 97
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 20.6 bits (41), Expect = 6.5
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +3
Query: 180 DCYYCISPS 206
DCY C SP+
Sbjct: 1067 DCYVCYSPN 1075
>AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein.
Length = 145
Score = 20.6 bits (41), Expect = 6.5
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -3
Query: 132 RHIALHNCH 106
RHI LH+C+
Sbjct: 102 RHITLHHCY 110
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 20.6 bits (41), Expect = 6.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 332 SLSSHYNKQYNQYK 291
SLS++YN N YK
Sbjct: 317 SLSNNYNYNNNNYK 330
>AY545000-1|AAS50159.2| 126|Apis mellifera profilin protein.
Length = 126
Score = 20.6 bits (41), Expect = 6.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +1
Query: 49 CVNTWQAVIVSL 84
C+ T QAV+VSL
Sbjct: 89 CMKTTQAVVVSL 100
>AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta
protein precursor protein.
Length = 145
Score = 20.6 bits (41), Expect = 6.5
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -3
Query: 132 RHIALHNCH 106
RHI LH+C+
Sbjct: 102 RHITLHHCY 110
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 20.2 bits (40), Expect = 8.6
Identities = 7/37 (18%), Positives = 19/37 (51%)
Frame = -1
Query: 230 YFIQMKHLTGAYAIITVFSLRHKINLKTKTHFKDTSL 120
+++ + G Y + ++ +H +++ T DTS+
Sbjct: 201 FYVPCIVMLGIYCRLYCYAQKHVKSIRAVTKLPDTSM 237
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +3
Query: 327 KRKLITYNCC 356
K+ ITY CC
Sbjct: 168 KKNTITYQCC 177
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +3
Query: 327 KRKLITYNCC 356
K+ ITY CC
Sbjct: 168 KKNTITYQCC 177
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +3
Query: 327 KRKLITYNCC 356
K+ ITY CC
Sbjct: 168 KKNTITYQCC 177
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +3
Query: 327 KRKLITYNCC 356
K+ ITY CC
Sbjct: 168 KKNTITYQCC 177
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +3
Query: 327 KRKLITYNCC 356
K+ ITY CC
Sbjct: 168 KKNTITYQCC 177
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +3
Query: 327 KRKLITYNCC 356
K+ ITY CC
Sbjct: 168 KKNTITYQCC 177
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +3
Query: 327 KRKLITYNCC 356
K+ ITY CC
Sbjct: 236 KKNTITYQCC 245
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +3
Query: 327 KRKLITYNCC 356
K+ ITY CC
Sbjct: 236 KKNTITYQCC 245
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,616
Number of Sequences: 438
Number of extensions: 2015
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 9424380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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