Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1390
         (383 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27530.1 68418.m03295 glycoside hydrolase family 28 protein /...    29   1.4  
At2g41770.1 68415.m05163 expressed protein contains Pfam domain ...    27   3.3  
At1g53330.1 68414.m06045 pentatricopeptide (PPR) repeat-containi...    27   4.3  
At5g37055.1 68418.m04446 zinc finger (HIT type) family protein c...    26   9.9  

>At5g27530.1 68418.m03295 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Lycopersicon esculentum] GI:4325090;
           contains PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 458

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 198 LCNNNSL*FKTQNQFENQDSF*RHIALHNCHFKVLQKL 85
           +CN N+L   T N   + DS   HI++ NCH+  + K+
Sbjct: 168 ICNCNNL---TINGITSIDSPKSHISIKNCHYVAISKI 202


>At2g41770.1 68415.m05163 expressed protein contains Pfam domain
           PF03385: Protein of unknown function, DUF288
          Length = 771

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -1

Query: 116 TIVILKFFKNSKLTITAC---HVFTHL*KIFTTY 24
           T+VIL   KNS L +      H++ HL KIF  Y
Sbjct: 547 TVVILSSQKNSDLYVEEAKLDHIYKHLPKIFDRY 580


>At1g53330.1 68414.m06045 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 471

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 161 INLKTKTHFKDTSLYTIVILKFFKNSKLTITACHVFTHL 45
           ++LKT T    T +    ++ FF   KL   A H+F  +
Sbjct: 71  LHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEM 109


>At5g37055.1 68418.m04446 zinc finger (HIT type) family protein
           contains Pfam profile: PF04438 HIT zinc finger
          Length = 171

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 27  SCKYFLQMCKYMAGSNC 77
           S +YF  +C Y+AG NC
Sbjct: 129 SRRYFCSVCGYIAGYNC 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,101,826
Number of Sequences: 28952
Number of extensions: 124784
Number of successful extensions: 242
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)