Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1389
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1013 - 7931756-7935109 31 0.68
06_01_0350 + 2534422-2535615 31 1.2
12_02_0407 - 18654134-18654172,18654913-18655803 30 2.1
05_06_0098 + 25560158-25560925 30 2.1
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 29 3.6
12_02_0969 - 24936399-24936699,24936779-24936949,24937032-249378... 29 4.8
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 29 4.8
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 8.4
12_02_0096 - 13573612-13573632,13573846-13573884,13574160-135744... 28 8.4
07_03_1361 - 25998873-25999223,25999311-25999461,25999546-259997... 28 8.4
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 8.4
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705 28 8.4
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 31.5 bits (68), Expect = 0.68
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 300 GYEPARHLHVHPSPEFQGPQRVSGHR 223
G+EP R + +HP+P+ + P R+ G +
Sbjct: 879 GWEPKRFITIHPTPKSKAPARILGSK 904
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 170 PWNSNAQAEKKTLPGPLGGVFRP 102
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 27 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 191
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>05_06_0098 + 25560158-25560925
Length = 255
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -3
Query: 454 HRPHPLPVQTRHAPVXRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 275
HRP P P + P +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -3
Query: 475 TNIDQTRH------RPHPLPVQTRHAPVXRANP 395
T IDQ H + H +PVQ H+PV + NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>12_02_0969 -
24936399-24936699,24936779-24936949,24937032-24937852,
24937946-24938407,24938486-24938890
Length = 719
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C ++ VP
Sbjct: 248 VHPTPRAQHDTNPSHHRSSCASIEVP 273
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = -3
Query: 235 IRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGT 56
I+ P M S + + GFHG L+ KL PDL + HF LVF G
Sbjct: 188 IKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFNPATNQLVFPGRGA 244
Query: 55 I 53
I
Sbjct: 245 I 245
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -1
Query: 477 ARTSTRPGTGRIRFPSKPDTPRSSE 403
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>12_02_0096 -
13573612-13573632,13573846-13573884,13574160-13574493,
13574660-13574830,13574913-13575730,13575812-13576114,
13576352-13577085,13577174-13577303
Length = 849
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C + +VP
Sbjct: 348 VHPTPRAQHDASPSQHRSSCASTKVP 373
>07_03_1361 -
25998873-25999223,25999311-25999461,25999546-25999783,
25999898-26000108,26000210-26000340,26000909-26001037,
26001329-26002130
Length = 670
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 582 DPVRNVRRFSRVSY*IYTVFEAALYKILTR*NEHNARTSTRPGTGRIRF-PSKP 424
D R +R V+ F A+Y++L ++ A + R GTG I F P+ P
Sbjct: 138 DMERKLRNTENVTVSDVGEFNGAIYEVLNATADYTAAAARRFGTGEISFDPTYP 191
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 465 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 379
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
Length = 1172
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1
Query: 291 PARHLHVHPSPEFQGPQRVSGHRRKCGALRVPNHISLL*DSMELER 154
P+ H +H S P+R RR+CGAL + + D + + R
Sbjct: 18 PSHHRLLHRSSLLPFPRRHHHRRRRCGALSIARASASAKDGVTVRR 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,372,168
Number of Sequences: 37544
Number of extensions: 496802
Number of successful extensions: 1655
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1654
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -