Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1384
(728 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 6e-09
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_595| Best HMM Match : CH (HMM E-Value=0) 31 0.96
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_58549| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/40 (80%), Positives = 34/40 (85%)
Frame = -1
Query: 125 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 6
SWI RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -1
Query: 110 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 6
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -1
Query: 110 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 6
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -1
Query: 110 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 6
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -1
Query: 110 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 6
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 58.4 bits (135), Expect = 6e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -1
Query: 107 RTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 6
RT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 48.0 bits (109), Expect = 8e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -1
Query: 107 RTSAKAFAKGVFINQERKLEVRRRLDT 27
RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 48.0 bits (109), Expect = 8e-06
Identities = 24/36 (66%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Frame = -1
Query: 110 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 6
R+T+ ++ AK VFINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 132 VKFLDRRKTNISESICQRCFHQSRTKV 52
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = -1
Query: 110 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 6
R+T+ ++ + VFINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -3
Query: 132 VKFLDRRKTNISESICQRCFHQSRTKV 52
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -1
Query: 110 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 6
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 129 KFLDRRKTNISESICQRCFHQSRTKV 52
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -1
Query: 110 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 6
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -3
Query: 132 VKFLDRRKTNISESICQRCFHQSRTKV 52
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -1
Query: 110 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 6
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -3
Query: 132 VKFLDRRKTNISESICQRCFHQSRTKV 52
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +3
Query: 672 DVVAVSQAPSPESNPDSP 725
DVVAVSQAPSPESNP+SP
Sbjct: 105 DVVAVSQAPSPESNPNSP 122
>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = -1
Query: 518 SSRVIPAPIAYTKIVAVKKL 459
++ VIPAPIAY K+VAVKKL
Sbjct: 34 AAAVIPAPIAYIKVVAVKKL 53
>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = -1
Query: 518 SSRVIPAPIAYTKIVAVKKL 459
++ VIPAPIAY K+VAVKKL
Sbjct: 79 AAAVIPAPIAYIKVVAVKKL 98
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = -1
Query: 518 SSRVIPAPIAYTKIVAVKKL 459
++ VIPAPIAY K+VAVKKL
Sbjct: 71 AAAVIPAPIAYIKVVAVKKL 90
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 598 TLTRPRNRNEYTLNILTRNNWRASLVPAAA 509
T + R ++++ R +WRASLVPAAA
Sbjct: 44 TCQQTTTRVHAAMHLVIRIHWRASLVPAAA 73
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = -1
Query: 518 SSRVIPAPIAYTKIVAVKKL 459
++ VIPAPIAY K+VAVKKL
Sbjct: 24 AAAVIPAPIAYIKVVAVKKL 43
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = -1
Query: 518 SSRVIPAPIAYTKIVAVKKL 459
++ VIPAPIAY K+VAVKKL
Sbjct: 11 AAAVIPAPIAYIKVVAVKKL 30
>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -1
Query: 509 VIPAPIAYTKIVAVKKL 459
VIPAPIAY K+VAVKKL
Sbjct: 10 VIPAPIAYIKVVAVKKL 26
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 681 AVSQAPSPESNPDSP 725
AVSQAPSPESNP+SP
Sbjct: 52 AVSQAPSPESNPNSP 66
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 682 PFLRLPLRNRTLIPR 726
PFLRLPLRNRTLI R
Sbjct: 224 PFLRLPLRNRTLILR 238
>SB_595| Best HMM Match : CH (HMM E-Value=0)
Length = 905
Score = 31.1 bits (67), Expect = 0.96
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Frame = -1
Query: 713 VRFRRGSLRNGYHIQGRQQA--RKLPTPGT 630
VR RG++++GY+ +QQA RK+P PG+
Sbjct: 329 VRSNRGTIQSGYYFCKQQQAARRKIPKPGS 358
>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +1
Query: 532 PSN--CSSLKYLKCTHSDYEAS*ESRIVIFRHYL-PVPGVGNLRA 657
PSN CS L YL+C +R+++F H L +G RA
Sbjct: 523 PSNLRCSILSYLRCNKPPVTIRWRTRLIVFTHLLVSYRSIGGQRA 567
>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 193 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 83
Q EV +++ GH Y C GE++ S++D H+ +P
Sbjct: 7 QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44
>SB_58549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 447
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 725 RGIRVRFRRGSLRNGYHIQGRQQARKLPT 639
R +RV FR G+L G H+ R ++PT
Sbjct: 341 RALRVHFRSGALPPGRHVVSRVLHPRMPT 369
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +2
Query: 194 KTNKIEPRSYSIIPCTKYSSTFLARFEHSNLFKVKLSAHL 313
K + ++ Y+ + +S RFEH+N ++KL+ ++
Sbjct: 725 KNHSVDKHDYNNVTPLLFSQERFERFEHNNSLEIKLTVNI 764
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,520,970
Number of Sequences: 59808
Number of extensions: 481152
Number of successful extensions: 1281
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -